3jxd_LR : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE P22 C2 REPRESSOR PROTEIN IN COMPLEX WITH SYNTHETIC OPERATOR 9C IN THE PRESENCE OF RB+
reference	Koudelka et al. J.Mol.Biol. 396 1145 2010
source	Enterobacteria phage P22
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	2r1j_L
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3jxd_L interface=19,29,30,31,32,34,35,38,40,41, tqlmgerirarrkklkirQaalgkmvgvSNVAiSQweRsETepngenllalskalqcspdyllkgd > 3jxd_R interface=19,29,30,31,32,34,35,38,40,41, tqlmgerirarrkklkirQaalgkmvgvSNVAiSQweRsETepngenllalskalqcspdyllkgd
interface signature	QSNVASQRET/QSNVASQRET

Estimated binding specificities ?

readout + contact

# IC=9.806 IC/col=0.700 n_of_columns=14

specificity:

A |   5   7  96  96   5  24  24  24  24   5   0   0  90  73
C |   5   5   0   0   0  24  24  24  24  24   0   0   1  11
G |   7  11   0   0  90  24  24  24  24   5   0   0   0   5
T |  79  73   0   0   1  24  24  24  24  62  96  96   5   7

scan!

home
updated Mon Sep 9 18:14:14 2024