3jxd_LR : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE P22 C2 REPRESSOR PROTEIN IN COMPLEX WITH SYNTHETIC OPERATOR 9C IN THE PRESENCE OF RB+
reference	Koudelka et al. J.Mol.Biol. 396 1145 2010
source	Enterobacteria phage P22
experiment	X-ray (resolution=2.10, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3jxd_L interface=19,29,30,31,32,34,35,38,40,41, tqlmgerirarrkklkirQaalgkmvgvSNVAiSQweRsETepngenllalskalqcspdyllkgd > 3jxd_R interface=19,29,30,31,32,34,35,38,40,41, tqlmgerirarrkklkirQaalgkmvgvSNVAiSQweRsETepngenllalskalqcspdyllkgd
interface signature	QSNVASQRET/QSNVASQRET

Estimated binding specificities ?

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# IC=9.770 IC/col=0.698 n_of_columns=14

specificity:

A |   5   7  96  96   5  24  24  24  24   7   0   0  84  79
C |   5   5   0   0   1  24  24  24  24  28   0   0   1   7
G |   5  11   0   0  90  24  24  24  24   5   0   0   0   5
T |  81  73   0   0   0  24  24  24  24  56  96  96  11   5

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updated Fri Dec 13 15:33:18 2024