| structure name | CRYSTAL STRUCTURE OF THE P22 C2 REPRESSOR PROTEIN IN COMPLEX WITH THE SYNTHETIC OPERATOR 9T (Repressor protein C2) |
| reference | Williams et al. Biochemistry 47 2325 2008 |
| source | Enterobacteria phage P22 |
| experiment | X-ray (resolution=1.53, R-factor=?) |
| structural superfamily | lambda repressor-like DNA-binding domains; |
| sequence family | Helixturnhelix; |
| multimeric complexes | 2r1j_LR 3jxb_CD 3jxc_LR 3jxd_LR |
| redundant complexes |  3jxb_C
3jxc_R
3jxd_L
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | QSNVASQRET |
Estimated binding specificities ?
| readout + contact |  |
A | 9 0 0 69 67 C | 67 0 0 9 11 G | 9 0 0 9 9 T | 11 96 96 9 9scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: C2 | ||
| ATTAAA | PubMed | 2r1j_L(3.56e-04), 3jxb_CD(5.34e-04), 3jxd_LR(3.47e-04), ... (total=6) |
Dendrogram of similar interfaces ?
matrix format--QT--STNTVTATSTQTRTETTT---- L +2r1j_L +-1 ----ATATTTPTTTNT------------ L +-----3 +6fix_D ! ! ----RTTT--AT--STRG----TT---- L +---5 +6chv_D ! ! RT--------RG----NT----ETRTYA L +--------6 +------7f9h_B ! ! ----SGAAKGSGYGST--RTQG------ L ! ! +3zkc_A ! +---------4 ----AT--QAAT--SA------------ --7 ! +4z5h_A ! +-2 ----STKCQAAT--SA------------ L ! +3dnv_B ! ------SGKGSCQTSTRG---------- L +-------------------6w1a_A |
home
updated Fri Sep 13 16:40:48 2024