interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA-DATP LT(0, 3) TERNARY COMPLEX
(DNA polymerase II)
referenceYang et al. 'Cell(Cambridge,Mass.)' 139 1279 2009
sourceEscherichia coli
experimentX-ray (resolution=2.70, R-factor=?)
structural superfamilyRibonuclease H-like;DNA/RNA polymerases;
sequence familyDNA polymerase family B;
reference complex3k59_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKRRN

Estimated binding specificities ?

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# IC=3.101 IC/col=0.775 n_of_columns=4 specificity:   
A |  16  54   0   0
C |  13  13  96   0
G |  13  13   0  96
T |  54  16   0   0
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updated Sat Aug 2 04:09:19 2025