interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF E.COLI POL II-NORMAL DNA-DCTP TERNARY COMPLEX
(DNA polymerase II)
referenceYang et al. 'Cell(Cambridge,Mass.)' 139 1279 2009
sourceEscherichia coli
experimentX-ray (resolution=1.92, R-factor=?)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family B;
redundant complexes3k57_A 3k58_A 3k5l_A 3k5m_A 3k5n_A 3maq_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKRRN

Estimated binding specificities ?

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# IC=3.184 IC/col=0.796 n_of_columns=4 specificity:   
A |  13  57   0   0
C |  13  13  96   0
G |  13  13   0  96
T |  57  13   0   0
scan!

Dendrogram of similar interfaces ?

matrix format



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updated Sun Aug  3 07:08:01 2025