3ko2_AB : 3D-footprint complex

structure name	I-MSOI RE-DESIGNED FOR ALTERED DNA CLEAVAGE SPECIFICITY (-7C)
reference	Stoddard et al. 'Nucleic 38 5601 2010
source	Monomastix sp.
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	2fld_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3ko2_A interface=19,21,23,27,29,30,36,44,67,70,72,74, tlqpteaayiagfldgdgSiYaRlipRpDYkdikyQvelaisfIqrkdkfpylqdiydqlgkrgtlRkdRgDgIadytiwgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki > 3ko2_B interface=19,21,23,25,27,29,30,36,38,44,67,70,72,74,80, tlqpteaayiagfldgdgSiYaRlIpRpDYkdikyQvElaisfIqrkdkfpylqdiydqlgkrgtlRkdRgDgIadytiWgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki
interface signature	SYRRDYQIRRDI/SYRIRDYQEIRRDIW

Estimated binding specificities ?

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# IC=24.288 IC/col=1.056 n_of_columns=23

specificity:

A |   3   3  96  96   3   0   0   0   0   5  24  24   3   0  96   0   0   3   3   3   0   0   3
C |   5   3   0   0  87   0   0   0  96   3  24  24  87   0   0  96   0   3   3  85   0   0  85
G |  85  87   0   0   3   0  96   0   0   3  24  24   3  96   0   0  96  87   3   5   0  96   5
T |   3   3   0   0   3  96   0  96   0  85  24  24   3   0   0   0   0   3  87   3  96   0   3

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updated Tue Jul 29 21:20:58 2025