3ko2_FG : 3D-footprint complex

structure name	I-MSOI RE-DESIGNED FOR ALTERED DNA CLEAVAGE SPECIFICITY (-7C)
reference	Stoddard et al. 'Nucleic 38 5601 2010
source	Monomastix sp.
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	2fld_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3ko2_F interface=19,21,23,27,29,30,44,67,70,72,74,80, tlqpteaayiagfldgdgSiYaRlipRpDYkdikyqvelaisfIqrkdkfpylqdiydqlgkrgtlRkdRgDgIadytiWgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki > 3ko2_G interface=19,21,23,25,27,29,38,44,67,70,72,74,80, tlqpteaayiagfldgdgSiYaRlIpRpDykdikyqvElaisfIqrkdkfpylqdiydqlgkrgtlRkdRgDgIadytiWgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki
interface signature	SYRRDYIRRDIW/SYRIRDEIRRDIW

Estimated binding specificities ?

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# IC=22.282 IC/col=1.061 n_of_columns=21

specificity:

A |   0  96  96   7   0   0   0   0   0  24  24   9   0  96   0   0   9   0   0   0   7
C |   0   0   0  73   0   0   0  96   0  24  24  73   0   0  96   0   7   0   0   0  75
G |  96   0   0   9   0  96   0   0   0  24  24   7  96   0   0  96  73   0   0  96   7
T |   0   0   0   7  96   0  96   0  96  24  24   7   0   0   0   0   7  96  96   0   7

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updated Fri Dec 13 15:48:20 2024