3l1p_AB : 3D-footprint complex

structure name	POU PROTEIN:DNA COMPLEX
reference	Vahokoski et al. 'Nat.Cell 15 295 2013
source	Mus musculus
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
reference complex	8bx1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3l1p_A interface=27,43,44,45,46,48,49,55,59,94,136,140,143, dmkalqkeleqfakllkqkritlgytQadvgltlgvlfgkvfSQTTiSRfealqLslkNmsklrpllekwveeadnnenlqeisksvqarkrkRtsienrvrwsletmflkspkpslqqithianqlglekdvvrVwfsNrrQkgkr > 3l1p_B interface=41,42,43,46,47,53,91,133,136,137,140, kalqkeleqfakllkqkritlgytqadvgltlgvlfgkvfSQTtiSRfealqLslknmsklrpllekwveeadnnenlqeisksqarkrkRtsienrvrwsletmflkspkpslqqithianqlglekdvvrVwfSNrrQkgkrs
interface signature	QSQTTSRLNRVNQ/SQTSRLRVSNQ

Estimated binding specificities ?

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# IC=18.805 IC/col=1.106 n_of_columns=17

specificity:

A |   4  96   0   4   0   0   0   4   0   0   8   0  96  80  96   4   4
C |  84   0   0   4   0   0  92  76   0   0   8  80   0   4   0   0   0
G |   4   0   0   4   0  96   0   8   0   0   4  16   0   8   0   0  92
T |   4   0  96  84  96   0   4   8  96  96  76   0   0   4   0  92   0

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updated Mon Sep 9 18:41:11 2024