8bx1_A : 3D-footprint complex

structure name	OCT4/SOX2 PROTEIN:DNA COMPLEX
reference	Chojnowski et al. 'To ? ? ?
experiment	X-ray (resolution=2.50, R-factor=0.254)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
sequence family	Pou domain Nterminal to homeobox domain;
multimeric complexes	3l1p_AB 6ht5_DE 8bx1_AE 8bx2_AE
redundant complexes	3l1p_A 8bx2_A 6ht5
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8bx1_A interface=30,46,47,48,49,51,52,117,120,121,124, gamdmkalqkeleqfakllkqkritlgytQadvgltlgvlfgkvfSQTTiSRfealqlslknmsklrpllekwveeadnnrvrwsletmflkspkpslqqithianqlglekdvvrVwfSNrrQkgk
interface signature	QSQTTSRVSNQ

Estimated binding specificities ?

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# IC=8.534 IC/col=0.853 n_of_columns=10

specificity:

A |   9  96   1   6   0  24  61  96  82   6
C |  75   0   6   2  96  24  13   0   0   6
G |   6   0   0  82   0  24   6   0   1  82
T |   6   0  89   6   0  24  16   0  13   2

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updated Sat Sep 14 09:15:44 2024