interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE PROTOTYPE FOAMY VIRUS (PFV) INTASOME IN APO FORM
(INTEGRASE)
referenceCherepanov et al. Nature 464 232 2010
sourceHUMAN SPUMARETROVIRUS
experimentX-ray (resolution=3.25, R-factor=0.198)
structural superfamilyRibonuclease H-like;
sequence familyIntegrase core domain;
reference complex3oym_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureIRQERP

Estimated binding specificities ?

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# IC=2.308 IC/col=0.577 n_of_columns=4 specificity:   
A |  16   9  74   1
C |  19   9   7  92
G |  16  69   8   2
T |  45   9   7   1
scan!

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updated Thu Jan 8 22:04:47 2026