interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE PROTOTYPE FOAMY VIRUS (PFV) INTASOME IN APO FORM
(INTEGRASE)
referenceCherepanov et al. Nature 464 232 2010
sourceHUMAN SPUMARETROVIRUS
experimentX-ray (resolution=3.25, R-factor=0.198)
structural superfamilyRibonuclease H-like;
sequence familyIntegrase core domain;
reference complex3oym_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureIRQERP

Estimated binding specificities ?

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# IC=2.292 IC/col=0.573 n_of_columns=4 specificity:   
A |   2   7  11  45
C |   1   7  67  16
G |  92   7   9  16
T |   1  75   9  19
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updated Sat Aug 2 04:17:12 2025