3lap_AD : 3D-footprint complex

structure name	THE STRUCTURE OF THE INTERMEDIATE COMPLEX OF THE ARGININE REPRESSOR FROM MYCOBACTERIUM TUBERCULOSIS BOUND TO ITS DNA OPERATOR AND L- CANAVANINE.
reference	TB Structural Genomics Consortium (TBSGC)
source	Mycobacterium tuberculosis
experiment	X-ray (resolution=2.15, R-factor=?)
structural superfamily	C-terminal domain of arginine repressor;"Winged helix" DNA-binding domain;
reference complex	3lap_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3lap_A interface=37,38,39,42,43, anragrqarivailssaqvrsqnelaallaaegievTQAtlSRdleelgavklrgadggtgiyvvpegvsggtdrmarllgellvstddsgnlavlrtppgaahylasaidraalpqvvgtiagddtilvvarepttgaqlagmfenlr > 3lap_D interface=36,37,38,41,42, nragrqarivailssaqvrsqnelaallaaegievTQAtlSRdleelgavklrgadggtgiyvvpedgspvrgvsggtdrmarllgellvstddsgnlavlrtppgaahylasaidraalpqvvgtiagddtilvvarepttgaqlagmfenlr
interface signature	TQASR/TQASR

Estimated binding specificities ?

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# IC=11.410 IC/col=0.878 n_of_columns=13

specificity:

A |   0   0  78   0   6  24  24   6  96   6   0   0  78
C |   0  96   6   0  78  24  24   6   0   6   0  96   6
G |  96   0   6   0   6  24  24   6   0   6  96   0   6
T |   0   0   6  96   6  24  24  78   0  78   0   0   6

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updated Mon Sep 9 18:42:15 2024