3m9e_AB : 3D-footprint complex

structure name	THYROID HORMONE BETA DNA BINDING DOMAIN HOMODIMER WITH INVERTED PALINDROME TRE
reference	Mol.Endocrinol. 24 1650 2010 X-RAY DIFFRACTION
source	Rattus norvegicus
experiment	X-ray (resolution=2.41, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	2nll_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3m9e_A interface=21,24,28,29,84, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlaKrklieenrekrrreelq > 3m9e_B interface=21,24,28,29,84, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlaKrklieenrekrrree
interface signature	EKRRK/EKRRK

Estimated binding specificities ?

readout + contact

# IC=11.979 IC/col=0.665 n_of_columns=18

specificity:

A |   8   0  70   0   0   4  24  24  24  24  24  24  33   0   0   0   0  91
C |   8   0   8  96  96  29  24  24  24  24  24  24   8   0   0  12  96   0
G |   4  96  10   0   0   5  24  24  24  24  24  24  50  96  96   0   0   0
T |  76   0   8   0   0  58  24  24  24  24  24  24   5   0   0  84   0   5

scan!

home
updated Fri Dec 15 15:52:46 2023