3m9e_AB : 3D-footprint complex

structure name	THYROID HORMONE BETA DNA BINDING DOMAIN HOMODIMER WITH INVERTED PALINDROME TRE
reference	Mol.Endocrinol. 24 1650 2010 X-RAY DIFFRACTION
source	Rattus norvegicus
experiment	X-ray (resolution=2.41, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	2nll_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3m9e_A interface=21,24,28,29,84, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlaKrklieenrekrrreelq > 3m9e_B interface=21,24,28,29,84, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlaKrklieenrekrrree
interface signature	EKRRK/EKRRK

Estimated binding specificities ?

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# IC=12.072 IC/col=0.671 n_of_columns=18

specificity:

A |   3   0  69   0   0   3  24  24  24  24  24  24  34   0   0   0   0  92
C |  10   0   7  96  96  30  24  24  24  24  24  24   3   0   0  11  96   1
G |   7  96  11   0   0  11  24  24  24  24  24  24  56  96  96   0   0   0
T |  76   0   9   0   0  52  24  24  24  24  24  24   3   0   0  85   0   3

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updated Tue Jul 29 21:53:41 2025