3m9e_AB : 3D-footprint complex

structure name	THYROID HORMONE BETA DNA BINDING DOMAIN HOMODIMER WITH INVERTED PALINDROME TRE
reference	Mol.Endocrinol. 24 1650 2010 X-RAY DIFFRACTION
source	Rattus norvegicus
experiment	X-ray (resolution=2.41, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	2nll_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3m9e_A interface=21,24,28,29,84, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlaKrklieenrekrrreelq > 3m9e_B interface=21,24,28,29,84, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlaKrklieenrekrrree
interface signature	EKRRK/EKRRK

Estimated binding specificities ?

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# IC=11.783 IC/col=0.655 n_of_columns=18

specificity:

A |   4   0  87   0   0   5  24  24  24  24  24  24  58   0   0  12   0  83
C |   4   0   0  96  96  25  24  24  24  24  24  24   8   0   0   4  96   8
G |   5  96   8   0   0   8  24  24  24  24  24  24  18  96  96  14   0   4
T |  83   0   1   0   0  58  24  24  24  24  24  24  12   0   0  66   0   1

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updated Mon Jan 5 05:25:47 2026