3m9e_AB : 3D-footprint complex

structure name	THYROID HORMONE BETA DNA BINDING DOMAIN HOMODIMER WITH INVERTED PALINDROME TRE
reference	Mol.Endocrinol. 24 1650 2010 X-RAY DIFFRACTION
source	Rattus norvegicus
experiment	X-ray (resolution=2.41, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	2nll_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3m9e_A interface=21,24,28,29,84, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlaKrklieenrekrrreelq > 3m9e_B interface=21,24,28,29,84, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlaKrklieenrekrrree
interface signature	EKRRK/EKRRK

Estimated binding specificities ?

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# IC=11.802 IC/col=0.656 n_of_columns=18

specificity:

A |  10   0  71   0   0   3  24  24  24  24  24  24  46   0   0   1   0  88
C |   7   0  10  96  96  32  24  24  24  24  24  24   7   0   0  10  96   3
G |   5  96  10   0   0   5  24  24  24  24  24  24  36  96  96   0   0   0
T |  74   0   5   0   0  56  24  24  24  24  24  24   7   0   0  85   0   5

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updated Wed Jun 24 17:13:53 2026