3m9e_EF : 3D-footprint complex

structure name	THYROID HORMONE BETA DNA BINDING DOMAIN HOMODIMER WITH INVERTED PALINDROME TRE
reference	Mol.Endocrinol. 24 1650 2010 X-RAY DIFFRACTION
source	Rattus norvegicus
experiment	X-ray (resolution=2.41, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	2nll_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3m9e_E interface=21,24,28,29,84, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlaKrklieenrekrrreelqk > 3m9e_F interface=21,24,28,29, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlakrklieenrekrrr
interface signature	EKRRK/EKRR

Estimated binding specificities ?

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# IC=12.221 IC/col=0.679 n_of_columns=18

specificity:

A |   0   0  72   0   0   4  24  24  24  24  24  24  20   0   0   0   0  76
C |   0   0   8  96  96  32  24  24  24  24  24  24  12   0   0   8  96   4
G |   0  96   4   0   0   4  24  24  24  24  24  24  52  96  96   0   0   8
T |  96   0  12   0   0  56  24  24  24  24  24  24  12   0   0  88   0   8

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updated Wed Jun 24 17:14:06 2026