3m9e_EF : 3D-footprint complex

structure name	THYROID HORMONE BETA DNA BINDING DOMAIN HOMODIMER WITH INVERTED PALINDROME TRE
reference	Mol.Endocrinol. 24 1650 2010 X-RAY DIFFRACTION
source	Rattus norvegicus
experiment	X-ray (resolution=2.41, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	2nll_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3m9e_E interface=21,24,28,29,84, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlaKrklieenrekrrreelqk > 3m9e_F interface=21,24,28,29, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlakrklieenrekrrr
interface signature	EKRRK/EKRR

Estimated binding specificities ?

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# IC=12.065 IC/col=0.670 n_of_columns=18

specificity:

A |   4   0  75   0   0   7  24  24  24  24  24  24  23   0   0   1   0  76
C |   0   0   7  96  96  19  24  24  24  24  24  24  11   0   0   7  96   6
G |   0  96   3   0   0  11  24  24  24  24  24  24  55  96  96   0   0   7
T |  92   0  11   0   0  59  24  24  24  24  24  24   7   0   0  88   0   7

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updated Mon Sep 9 18:58:31 2024