3m9e_EF : 3D-footprint complex

structure name	THYROID HORMONE BETA DNA BINDING DOMAIN HOMODIMER WITH INVERTED PALINDROME TRE
reference	Mol.Endocrinol. 24 1650 2010 X-RAY DIFFRACTION
source	Rattus norvegicus
experiment	X-ray (resolution=2.41, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	2nll_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3m9e_E interface=21,24,28,29,84, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlaKrklieenrekrrreelqk > 3m9e_F interface=21,24,28,29, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlakrklieenrekrrr
interface signature	EKRRK/EKRR

Estimated binding specificities ?

readout + contact

# IC=10.290 IC/col=0.572 n_of_columns=18

specificity:

A |   7   0  73   0   0  24  24  24  24  24  24  24  24   0   0   7   0  75
C |   7   0   9  96  96  24  24  24  24  24  24  24  24   0   0   7  96   7
G |   9  96   7   0   0  24  24  24  24  24  24  24  24  96  96   9   0   7
T |  73   0   7   0   0  24  24  24  24  24  24  24  24   0   0  73   0   7

scan!

home
updated Mon Jan 5 05:26:02 2026