3m9e_EF : 3D-footprint complex

structure name	THYROID HORMONE BETA DNA BINDING DOMAIN HOMODIMER WITH INVERTED PALINDROME TRE
reference	Mol.Endocrinol. 24 1650 2010 X-RAY DIFFRACTION
source	Rattus norvegicus
experiment	X-ray (resolution=2.41, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	2nll_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3m9e_E interface=21,24,28,29,84, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlaKrklieenrekrrreelqk > 3m9e_F interface=21,24,28,29, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlakrklieenrekrrr
interface signature	EKRRK/EKRR

Estimated binding specificities ?

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# IC=11.999 IC/col=0.667 n_of_columns=18

specificity:

A |   4   0  78   0   0   8  24  24  24  24  24  24  15   0   0   0   0  74
C |   4   0   4  96  96  19  24  24  24  24  24  24   8   0   0   8  96   6
G |   6  96  10   0   0   4  24  24  24  24  24  24  65  96  96   0   0   8
T |  82   0   4   0   0  65  24  24  24  24  24  24   8   0   0  88   0   8

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updated Fri Dec 13 16:21:20 2024