3m9e_EF : 3D-footprint complex

structure name	THYROID HORMONE BETA DNA BINDING DOMAIN HOMODIMER WITH INVERTED PALINDROME TRE
reference	Mol.Endocrinol. 24 1650 2010 X-RAY DIFFRACTION
source	Rattus norvegicus
experiment	X-ray (resolution=2.41, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	2nll_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3m9e_E interface=21,24,28,29,84, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlaKrklieenrekrrreelqk > 3m9e_F interface=21,24,28,29, elcvvcgdkatgyhyrcitcEgcKgffRRtiqkslhpsysckyegkciidkvtrnqcqecrfkkciyvgmatdlvlddskrlakrklieenrekrrr
interface signature	EKRRK/EKRR

Estimated binding specificities ?

readout + contact

# IC=11.280 IC/col=0.627 n_of_columns=18

specificity:

A |  13   0  82   0   0   6  24  24  24  24  24  24  24   0   0   6   0  78
C |   6   0   0  96  96  68  24  24  24  24  24  24  24   0   0   2  96   6
G |   9  96  14   0   0   2  24  24  24  24  24  24  24  96  96  13   0   6
T |  68   0   0   0   0  20  24  24  24  24  24  24  24   0   0  75   0   6

scan!

home
updated Tue Jul 29 21:53:54 2025