interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF E.COLI POL II-NORMAL DNA-DGTP TERNARY COMPLEX
(DNA polymerase II)
referenceYang et al. 'Cell(Cambridge,Mass.)' 139 1279 2009
sourceEscherichia coli
experimentX-ray (resolution=2.40, R-factor=0.237)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family B;
reference complex3k59_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKRR

Estimated binding specificities ?

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# IC=3.142 IC/col=0.786 n_of_columns=4 specificity:   
A |  13  54   0   0
C |  13  16  96   0
G |  13  13   0  96
T |  57  13   0   0
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updated Sat Aug 2 04:25:15 2025