3mip_AB : 3D-footprint complex

structure name	I-MSOI RE-DESIGNED FOR ALTERED DNA CLEAVAGE SPECIFICITY (-8GCG)
reference	Stoddard et al. 'Nucleic 38 5601 2010
source	SYNTHETIC CONSTRUCT
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	2fld_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mip_A interface=19,21,23,25,27,29,30,36,38,44,65,67,70,72,74,78,80, tlqpteaayiagfldgdgSiYaRlEpRpDYkdikyQvRlaisfIqrkdkfpylqdiydqlgkrgIlRkdRgDgIadyRiYgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki > 3mip_B interface=19,21,23,25,27,29,30,36,38,44,67,70,72,74,78,80, tlqpteaayiagfldgdgSiYaRlEpRpDYkdikyQvRlaisfIqrkdkfpylqdiydqlgkrgilRkdRgDgIadyRiYgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki
interface signature	SYRERDYQRIIRRDIRY/SYRERDYQRIRRDIRY

Estimated binding specificities ?

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# IC=24.421 IC/col=1.110 n_of_columns=22

specificity:

A |  13   0  96   0   0   0   0   0   0   0  24  24  13   0  96   0   0   0   0   0   0   0
C |  13   0   0   0  96   0   0   0  96   0  24  24  54   0   0  96  96   0  96  96   0   0
G |  54  96   0  96   0  96  96   0   0   0  24  24  16  96   0   0   0  96   0   0   0  96
T |  16   0   0   0   0   0   0  96   0  96  24  24  13   0   0   0   0   0   0   0  96   0

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updated Mon Sep 9 19:09:41 2024