3mkz_AN : 3D-footprint complex

structure name	STRUCTURE OF SOPB(155-272)-18MER COMPLEX, P21 FORM
reference	'Nucleic 38 4514 2010
source	Escherichia coli
experiment	X-ray (resolution=2.98, R-factor=?)
structural superfamily	KorB DNA-binding domain-like;
reference complex	3mkz_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mkz_A interface=24,33,34,35,36,39,63, ptsayergqryasrlqnefagniSaladaeniSRKIitRcintaklpksvvalfshpgelsaRsgdalqkaftdkeellkqqasnlheqkkagvifeadevitlltsvlkts > 3mkz_N interface=33,34,35,36,39,63, ptsayergqryasrlqnefagnisaladaeniSRKIitRcintaklpksvvalfshpgelsaRsgdalqkaftdkeellkqqasnlheqkkagvifeadevitlltsvlk
interface signature	SSRKIRR/SRKIRR

Estimated binding specificities ?

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# IC=17.802 IC/col=1.113 n_of_columns=16

specificity:

A |   5   0   5   0  96   0   0  80   5   0   0   5   0   5   0  96
C |   6   0   5   0   0  96  96   5   5   0   0   5  96  80  96   0
G |   5  96  81  96   0   0   0   5   6  96  96   5   0   5   0   0
T |  80   0   5   0   0   0   0   6  80   0   0  81   0   6   0   0

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updated Fri Dec 15 16:06:08 2023