interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF SOPB(155-323)-18MER DNA COMPLEX, I23 FORM
(Protein sopB)
referenceSchumacher et al. 'Nucleic 38 4514 2010
sourceEscherichia coli
experimentX-ray (resolution=2.86, R-factor=0.242)
structural superfamilyKorB DNA-binding domain-like;
multimeric complexes3mkz_AN
redundant complexes3mkw_B 3mkz_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSSRKIRR

Estimated binding specificities ?

readout + contactlogo
# IC=8.431 IC/col=1.054 n_of_columns=8 specificity:   
A |  13   0   0   0   0  16   0  96
C |  13   0   0   0  96  54  96   0
G |  16  96  96   0   0  13   0   0
T |  54   0   0  96   0  13   0   0
scan!

Dendrogram of similar interfaces ?

matrix format



home

updated Sat Jan 10 06:14:58 2026