3mln_AB : 3D-footprint complex

structure name	DNA BINDING DOMAIN OF EARLY B-CELL FACTOR 1 (EBF1) BOUND TO DNA (CRYSTAL FORM II)
reference	Grosschedl et al. 'Genes 24 2270 2010
source	Mus musculus
experiment	X-ray (resolution=2.40, R-factor=?)
reference complex	3mln_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mln_A interface=29,31,32,129,138,168,170,202,203,204,205, gvldantaaqsgvglarahfekqppsnlRkSNffhfvlalydrqgqpveiertafvgfvekekeansektnngihyrlqllysngirteqdfyvrlidsmtkqaivyegqdknpemcrvlltheimcsRccdkkscgNrnetpsdpviidrfflkfflkcnqnclknAgNprdmrrfqvvvsttvnvdghvlavsdnmfvhNNSKh > 3mln_B interface=29,31,32,129,138,168,170,202,203,204,205, gvldantaaqsgvglarahfekqppsnlRkSNffhfvlalydrqgqpveiertafvgfvekekeansektnngihyrlqllysngirteqdfyvrlidsmtkqaivyegqdknpemcrvlltheimcsRccdkkscgNrnetpsdpviidrfflkfflkcnqnclknAgNprdmrrfqvvvsttvnvdghvlavsdnmfvhNNSKhgenlyfq
interface signature	RSNRNANNNSK/RSNRNANNNSK

Estimated binding specificities ?

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# IC=14.112 IC/col=0.941 n_of_columns=15

specificity:

A |  12  24  24   0   6   0   0   0  96   0   0   0   0  84  72
C |  12  24  24   6   6  96  96  96   0   0   0   0   0   6  12
G |   6  24  24   6   6   0   0   0   0   0  96  96  96   6   6
T |  66  24  24  84  78   0   0   0   0  96   0   0   0   0   6

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updated Mon Sep 9 19:10:34 2024