structure name | DNA BINDING DOMAIN OF EARLY B-CELL FACTOR 1 (EBF1) BOUND TO DNA (CRYSTAL FORM II) (Transcription factor COE1) |
reference | Grosschedl et al. 'Genes 24 2270 2010 |
source | Mus musculus |
experiment | X-ray (resolution=2.40, R-factor=0.173) |
multimeric complexes | 3mln_AB 3mlo_AB |
redundant complexes | 3mlo_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RSNRNANNNSK |
Estimated binding specificities ?
readout + contact |
A | 0 24 24 24 0 0 0 0 85 64 24 24 64 C | 85 24 24 24 0 0 0 0 0 12 24 24 10 G | 1 24 24 24 0 96 96 96 11 10 24 24 12 T | 10 24 24 24 96 0 0 0 0 10 24 24 10scan! |
Dendrogram of similar interfaces ?
matrix formatRGSTNTRCNGATNA--NCNTSGKG L +3mln_A +-------------------------1 RGSTNTRCNCATNT--NCNTSGKG L ! +3mlp_F --3 --------------RGATCT---- L ! +---3q05_D +---------------------2 ----------------ATCT---- +---3qyn_C |
home
updated Tue Dec 19 07:50:39 2023