3mlo_AB : 3D-footprint complex

structure name	DNA BINDING DOMAIN OF EARLY B-CELL FACTOR 1 (EBF1) BOUND TO DNA (CRYSTAL FORM I)
reference	Grosschedl et al. 'Genes 24 2270 2010
source	Mus musculus
experiment	X-ray (resolution=3.01, R-factor=?)
reference complex	3mln_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mlo_A interface=29,31,32,129,138,168,170,202,203,204,205, gvldantaaqsgvglarahfekqppsnlRkSNffhfvlalydrqgqpveiertafvgfvekekeansektnngihyrlqllysngirteqdfyvrlidsmtkqaivyegqdknpemcrvlltheimcsRccdkkscgNrnetpsdpviidrfflkfflkcnqnclknAgNprdmrrfqvvvsttvnvdghvlavsdnmfvhNNSKhgenlyf > 3mlo_B interface=29,31,32,129,138,168,170,202,203,204,205, gvldantaaqsgvglarahfekqppsnlRkSNffhfvlalydrqgqpveiertafvgfvekekeansektnngihyrlqllysngirteqdfyvrlidsmtkqaivyegqdknpemcrvlltheimcsRccdkkscgNrnetpsdpviidrfflkfflkcnqnclknAgNprdmrrfqvvvsttvnvdghvlavsdnmfvhNNSKhgenlyfq
interface signature	RSNRNANNNSK/RSNRNANNNSK

Estimated binding specificities ?

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# IC=15.666 IC/col=0.922 n_of_columns=17

specificity:

A |   7   0  24   0  12   0   0   0  96   0   0  10   0  60  92  24  71
C |  10   5  24   0  14  96  96  96   0   0   0   0   0  10   3  24   7
G |   8   3  24   0   3   0   0   0   0   0  96  86  96  12   0  24  11
T |  71  88  24  96  67   0   0   0   0  96   0   0   0  14   1  24   7

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updated Mon Sep 9 19:10:51 2024