3mlp_EF : 3D-footprint complex

structure name	EARLY B-CELL FACTOR 1 (EBF1) BOUND TO DNA
reference	Grosschedl et al. 'Genes 24 2270 2010
source	Mus musculus
experiment	X-ray (resolution=2.80, R-factor=?)
reference complex	3mln_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mlp_E interface=28,30,31,128,137,167,169,201,202,203,204, vldantaaqsgvglarahfekqppsnlRkSNffhfvlalydrqgqpveiertafvgfvekekeansektnngihyrlqllysngirteqdfyvrlidsmtkqaivyegqdknpemcrvlltheimcsRccdkkscgNrnetpsdpviidrfflkfflkcnqnclknAgNprdmrrfqvvvsttvnvdghvlavsdnmfvhNNSKhgrrarrldpseaatpcikaispsegwttggatviiigdnffdglqvifgtmlvwselitphairvqtpprhipgvvevtlsykskqfckgtpgrfiyt > 3mlp_F interface=28,30,31,128,137,167,169,201,202,203,204, vldantaaqsgvglarahfekqppsnlRkSNffhfvlalydrqgqpveiertafvgfvekekeansektnngihyrlqllysngirteqdfyvrlidsmtkqaivyegqdknpemcrvlltheimcsRccdkkscgNrnetpsdpviidrfflkfflkcnqnclknAgNprdmrrfqvvvsttvnvdghvlavsdnmfvhNNSKhgseaatpcikaispsegwttggatviiigdnffdglqvifgtmlvwselitphairvqtpprhipgvvevtlsykskqfckgtpgrfiytaln
interface signature	RSNRNANNNSK/RSNRNANNNSK

Estimated binding specificities ?

readout + contact

# IC=14.437 IC/col=0.962 n_of_columns=15

specificity:

A |   3  14   0   0   0  96   0   0   0   0  73  73  24  70  81
C |   3   7  96  96  96   0   0   0   0   0   7   9  24  12   7
G |   3   9   0   0   0   0   0  96  96  96   9   7  24   7   3
T |  87  66   0   0   0   0  96   0   0   0   7   7  24   7   5

scan!

home
updated Wed Jun 24 17:29:48 2026