3mlp_EF : 3D-footprint complex

structure name	EARLY B-CELL FACTOR 1 (EBF1) BOUND TO DNA
reference	Grosschedl et al. 'Genes 24 2270 2010
source	Mus musculus
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	E set domains;
reference complex	3mlp_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mlp_E interface=28,30,31,128,137,167,169,201,202,203,204, vldantaaqsgvglarahfekqppsnlRkSNffhfvlalydrqgqpveiertafvgfvekekeansektnngihyrlqllysngirteqdfyvrlidsmtkqaivyegqdknpemcrvlltheimcsRccdkkscgNrnetpsdpviidrfflkfflkcnqnclknAgNprdmrrfqvvvsttvnvdghvlavsdnmfvhNNSKhgrrarrldpseaatpcikaispsegwttggatviiigdnffdglqvifgtmlvwselitphairvqtpprhipgvvevtlsykskqfckgtpgrfiyt > 3mlp_F interface=28,30,31,128,137,167,169,201,202,203,204, vldantaaqsgvglarahfekqppsnlRkSNffhfvlalydrqgqpveiertafvgfvekekeansektnngihyrlqllysngirteqdfyvrlidsmtkqaivyegqdknpemcrvlltheimcsRccdkkscgNrnetpsdpviidrfflkfflkcnqnclknAgNprdmrrfqvvvsttvnvdghvlavsdnmfvhNNSKhgseaatpcikaispsegwttggatviiigdnffdglqvifgtmlvwselitphairvqtpprhipgvvevtlsykskqfckgtpgrfiytaln
interface signature	RSNRNANNNSK/RSNRNANNNSK

Estimated binding specificities ?

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# IC=14.881 IC/col=0.992 n_of_columns=15

specificity:

A |   4   9  24   4   4   0   0   0  96   0   0   0   0  68  82
C |   4   1  24   9   6  96  96  96   0   0   0   0   0   4   6
G |   4   9  24   9   4   0   0   0   0   0  96  96  96  11   4
T |  84  77  24  74  82   0   0   0   0  96   0   0   0  13   4

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updated Tue Jul 29 22:07:47 2025