3mlp_EF : 3D-footprint complex

structure name	EARLY B-CELL FACTOR 1 (EBF1) BOUND TO DNA
reference	Grosschedl et al. 'Genes 24 2270 2010
source	Mus musculus
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	E set domains;
reference complex	3mlp_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mlp_E interface=28,30,31,128,137,167,169,201,202,203,204, vldantaaqsgvglarahfekqppsnlRkSNffhfvlalydrqgqpveiertafvgfvekekeansektnngihyrlqllysngirteqdfyvrlidsmtkqaivyegqdknpemcrvlltheimcsRccdkkscgNrnetpsdpviidrfflkfflkcnqnclknAgNprdmrrfqvvvsttvnvdghvlavsdnmfvhNNSKhgrrarrldpseaatpcikaispsegwttggatviiigdnffdglqvifgtmlvwselitphairvqtpprhipgvvevtlsykskqfckgtpgrfiyt > 3mlp_F interface=28,30,31,128,137,167,169,201,202,203,204, vldantaaqsgvglarahfekqppsnlRkSNffhfvlalydrqgqpveiertafvgfvekekeansektnngihyrlqllysngirteqdfyvrlidsmtkqaivyegqdknpemcrvlltheimcsRccdkkscgNrnetpsdpviidrfflkfflkcnqnclknAgNprdmrrfqvvvsttvnvdghvlavsdnmfvhNNSKhgseaatpcikaispsegwttggatviiigdnffdglqvifgtmlvwselitphairvqtpprhipgvvevtlsykskqfckgtpgrfiytaln
interface signature	RSNRNANNNSK/RSNRNANNNSK

Estimated binding specificities ?

readout + contact

# IC=14.425 IC/col=0.962 n_of_columns=15

specificity:

A |   6   9   0   0   0  96   0   0   0   0  72  72  24  72  83
C |   3  15  96  96  96   0   0   0   0   0  10   7  24  14   7
G |   3   7   0   0   0   0   0  96  96  96   7   7  24   3   3
T |  84  65   0   0   0   0  96   0   0   0   7  10  24   7   3

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updated Mon Sep 9 19:11:13 2024