structure name | EARLY B-CELL FACTOR 1 (EBF1) BOUND TO DNA (Transcription factor COE1) |
reference | Grosschedl et al. 'Genes 24 2270 2010 |
source | Mus musculus |
experiment | X-ray (resolution=2.80, R-factor=0.207) |
structural superfamily | E set domains; |
sequence family | IPT/TIG domain; |
multimeric complexes | 3mlp_EF |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RSNRNANNNSK |
Estimated binding specificities ?
readout + contact |
A | 13 24 0 0 0 96 24 24 24 13 C | 13 24 96 96 96 0 24 24 24 16 G | 13 24 0 0 0 0 24 24 24 54 T | 57 24 0 0 0 0 24 24 24 13scan! |
Dendrogram of similar interfaces ?
matrix formatRGSTNTRCNCATNTNCNTSGKG-------- L +--------3mlp_F +-----------------1 RGSTNTRCNGATNANCNTSGKG-------- L ! +--------3mln_A --4 ------------------------KT---- L ! +----------------2ram_A +---------3 ----------------------QA------ L ! +------------1imh_C +---2 --------------------------KARC L +------------1p7h_L |
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updated Tue Dec 19 07:51:01 2023