3mvb_O : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A TRIPLE RFY MUTANT OF HUMAN MTERF1 BOUND TO THE TERMINATION SEQUENCE (Transcription termination factor, mitochondrial)
reference	Yakubovskaya et al. 'Cell(Cambridge,Mass.)' 141 982 2010
source	Homo sapiens
experiment	X-ray (resolution=2.79, R-factor=0.206)
sequence family	mTERF;
reference complex	3mva_O
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mvb_O interface=56,58,87,90,93,97,123,126,127,130,168,169,170,179,208,211,212,213,247,250,278,281,312,315, edllknlltmgvdidmarkrqpgvfhrmitneqdlkmfllskgaskeviasiisrYpRaitrtpenlskrwdlwrkivtsdleivnIleAspEsffRsnnnlnlennikflysvgltrkclcRllTNapRtfsnsldlnkqmveflqaaglslghndpadfvrkiifKNPailiqstkRvkanieflrstfnlnseellvlicgpgaEilDLSndaarrsyanikeklfslgcteeevqkfvlsypDviFlaekkfndkidclmeenisisqiienpRvlDssistlksrikelvnagcnlstlnitllswSkkRyeaklkkls
interface signature	YRIAERRTNRKNPREDLSDFRDSR

Estimated binding specificities ?

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# IC=15.999 IC/col=1.000 n_of_columns=16

specificity:

A |  11  69   0   0   0   0  96   0  96  24  24   0   0   0   0  11
C |   9   9   0   0   0  96   0   0   0  24  24  96  96   0   0   9
G |  67   9   0  96  96   0   0  96   0  24  24   0   0  96  96   9
T |   9   9  96   0   0   0   0   0   0  24  24   0   0   0   0  67

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updated Thu Sep 12 17:44:16 2024