3mva_O : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HUMAN MTERF1 BOUND TO THE TERMINATION SEQUENCE (Transcription termination factor, mitochondrial)
reference	Yakubovskaya et al. 'Cell(Cambridge,Mass.)' 141 982 2010
source	Homo sapiens
experiment	X-ray (resolution=2.20, R-factor=0.208)
sequence family	mTERF;
redundant complexes	3mvb_O 3n6s_A 3n7q_A 5cky_O 5co0_O 5crj_O 5crk_O
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mva_O interface=56,58,90,93,97,126,127,130,171,174,175,179,208,211,212,213,216,247,278,281,312,315, edllknlltmgvdidmarkrqpgvfhrmitneqdlkmfllskgaskeviasiisrYpRaitrtpenlskrwdlwrkivtsdleivnileRspEsffRsnnnlnlennikflysvgltrkclcrllTNapRtfsnsldlnkqmveflqaaglslghndpadfvrkiifknpFilIQstkRvkanieflrstfnlnseellvlicgpgaEilDLSndYarrsyanikeklfslgcteeevqkfvlsypDviflaekkfndkidclmeenisisqiienpRvlDssistlksrikelvnagcnlstlnitllswSkkRyeaklkkls
interface signature	YRRERTNRFIQREDLSYDRDSR

Estimated binding specificities ?

contact

# IC=15.094 IC/col=1.078 n_of_columns=14

specificity:

A |  96   0   0   0  13  13  24   0   0   0   0   0   0  96
C |   0  96  96   0  16  13  24   0  96   0   0  96  96   0
G |   0   0   0  96  54  54  24   0   0   0  96   0   0   0
T |   0   0   0   0  13  16  24  96   0  96   0   0   0   0

scan!

Related DNA sequences reported in the literature ?

site	source	matches (E-value)
term: MTERF1
TGGCAGAGCCC	PubMed	3mva_O(2.81e-14), 5co0_O(1.86e-13), 3mvb_O(7.32e-10), ... (total=5)
GTGTGGCA	PubMed	3mva_O(1.06e-02), 5crk_O(1.06e-02)

home
updated Fri Sep 13 17:26:40 2024