3mxb_AB : 3D-footprint complex

structure name	MOLECULAR BASIS OF ENGINEERED MEGANUCLEASE TARGETING OF THE ENDOGENOUS HUMAN RAG1 LOCUS
reference	Subramanian et al. 'Nucleic 39 729 2011
source	CHLAMYDOMONAS REINHARDTII
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B 3mxb_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mxb_A interface=21,23,25,27,29,31,37,39,43,45,65,67,72,74,138,139, ntkynkkfllylagfvdgdgSiIaQiNpNqSskfkhRlRltfYvTqktqrrwfldklvdeigvgYvRdsgsVsQyvlseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravlds > 3mxb_B interface=21,23,25,27,29,31,32,37,39,43,45,67,69,72,74,76,78,138,139, ntkyneefllylagfvdsdgSiIaQiKpRqSNkfkhQlSltfAvTqktqrrwfldklvdeigvgyvYdSgsVsDyRlSeikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravlds
interface signature	SIQNNSRRYTYRVQKT/SIQKRSNQSATYSVDRSKT

Estimated binding specificities ?

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# IC=23.342 IC/col=1.015 n_of_columns=23

specificity:

A |   0  24   0   0   0   2   0   0  96   5   5   2   7   7   2  12   0  96   0  24  82   0  96
C |   0  24   0   0   0  88   0   0   0   9   5   4   4  70  82   0   0   0   0  24   7  96   0
G |   0  24   0  96  96   2   0  96   0  80  78   2   2   7   5   0  96   0  96  24   5   0   0
T |  96  24  96   0   0   4  96   0   0   2   8  88  83  12   7  84   0   0   0  24   2   0   0

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updated Mon Sep 9 19:14:57 2024