3mxb_RS : 3D-footprint complex

structure name	MOLECULAR BASIS OF ENGINEERED MEGANUCLEASE TARGETING OF THE ENDOGENOUS HUMAN RAG1 LOCUS
reference	Subramanian et al. 'Nucleic 39 729 2011
source	CHLAMYDOMONAS REINHARDTII
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mxb_R interface=21,23,25,27,29,31,37,39,43,45,65,67,72,74,138,139, ntkynkkfllylagfvdgdgSiIaQiNpNqSskfkhRlRltfYvTqktqrrwfldklvdeigvgYvRdsgsVsQyvlseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravldsl > 3mxb_S interface=21,23,25,27,29,31,32,37,39,43,45,67,72,74,76,78,139, ntkyneefllylagfvdsdgSiIaQiKpRqSNkfkhQlSltfAvTqktqrrwfldklvdeigvgyvYdsgsVsDyRlSeikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndskTrkttsetvravld
interface signature	SIQNNSRRYTYRVQKT/SIQKRSNQSATYVDRST

Estimated binding specificities ?

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# IC=23.038 IC/col=1.097 n_of_columns=21

specificity:

A |   0   0   0   2   0   0  96   0  10   2  94   6   2   2  74  96   0  78  88   0  96
C |   0   0   0  90   0   0   0   4   2   0   2  66  76   2   0   0   0   2   2  96   0
G |   0  96  96   2   0  96   0  90  72   2   0   6   8   4  20   0  96  14   4   0   0
T |  96   0   0   2  96   0   0   2  12  92   0  18  10  88   2   0   0   2   2   0   0

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updated Fri Dec 13 16:39:44 2024