3mxb_RS : 3D-footprint complex

structure name	MOLECULAR BASIS OF ENGINEERED MEGANUCLEASE TARGETING OF THE ENDOGENOUS HUMAN RAG1 LOCUS
reference	Subramanian et al. 'Nucleic 39 729 2011
source	CHLAMYDOMONAS REINHARDTII
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B 3mxb_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mxb_R interface=21,23,25,27,29,31,37,39,43,45,65,67,72,74,138,139, ntkynkkfllylagfvdgdgSiIaQiNpNqSskfkhRlRltfYvTqktqrrwfldklvdeigvgYvRdsgsVsQyvlseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravldsl > 3mxb_S interface=21,23,25,27,29,31,32,37,39,43,45,67,72,74,76,78,139, ntkyneefllylagfvdsdgSiIaQiKpRqSNkfkhQlSltfAvTqktqrrwfldklvdeigvgyvYdsgsVsDyRlSeikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndskTrkttsetvravld
interface signature	SIQNNSRRYTYRVQKT/SIQKRSNQSATYVDRST

Estimated binding specificities ?

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# IC=22.941 IC/col=1.092 n_of_columns=21

specificity:

A |   0   0   1   6   0   0   1  84   9   5   2  94  21   0   0   0  96   0   0   0  96
C |   0   0   3  13  96   0  30   4   5   7   1   0  63  96   0  96   0   0  96  96   0
G |   0  96   6   1   0   0   4   3  74  71   1   2   5   0   0   0   0  96   0   0   0
T |  96   0  86  76   0  96  61   5   8  13  92   0   7   0  96   0   0   0   0   0   0

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updated Mon Sep 9 19:15:20 2024