3mxb_RS : 3D-footprint complex

structure name	MOLECULAR BASIS OF ENGINEERED MEGANUCLEASE TARGETING OF THE ENDOGENOUS HUMAN RAG1 LOCUS
reference	Subramanian et al. 'Nucleic 39 729 2011
source	CHLAMYDOMONAS REINHARDTII
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B 3mxb_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mxb_R interface=21,23,25,27,29,31,37,39,43,45,65,67,72,74,138,139, ntkynkkfllylagfvdgdgSiIaQiNpNqSskfkhRlRltfYvTqktqrrwfldklvdeigvgYvRdsgsVsQyvlseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravldsl > 3mxb_S interface=21,23,25,27,29,31,32,37,39,43,45,67,72,74,76,78,139, ntkyneefllylagfvdsdgSiIaQiKpRqSNkfkhQlSltfAvTqktqrrwfldklvdeigvgyvYdsgsVsDyRlSeikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndskTrkttsetvravld
interface signature	SIQNNSRRYTYRVQKT/SIQKRSNQSATYVDRST

Estimated binding specificities ?

readout + contact

# IC=22.648 IC/col=1.078 n_of_columns=21

specificity:

A |   0   0   2   4   0   0   2  82   7   6   2  89   8   0   0   0  96   2   0   0  96
C |   0   0   2  17  96   0  24   4   6   8   3   2  79  96   0  96   0   5  96  96   0
G |   0  96   2   2   0   0   4   4  77  73   2   2   5   0   0   0   0  87   0   0   0
T |  96   0  90  73   0  96  66   6   6   9  89   3   4   0  96   0   0   2   0   0   0

scan!

home
updated Tue Jul 29 22:12:01 2025