3mzh_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF CAMP RECEPTOR PROTEIN FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH CAMP AND ITS DNA BINDING ELEMENT
reference	Wilmanns et al. 'To ? ? ?
source	Mycobacterium tuberculosis
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	cAMP-binding domain-like;"Winged helix" DNA-binding domain;
reference complex	3mzh_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mzh_A interface=188,189,190,191,193,194, hmdeilaragifqgvepsaiaaltkqlqpvdfprghtvfaegepgdrlyiiisgkvkigrrapdgrenlltimgpsdmfgelsifdpgprtssattitevravsmdrdalrswiadrpeiseqllrvlarrlrrtnnnladliftdvpgrvakqllqlaqrfgtqeggalrvthdltqeeiaqlvgaSRETvNKaladfahrgwirlegksvlisdserlarrar > 3mzh_B interface=188,189,190,191,193,194, hmdeilaragifqgvepsaiaaltkqlqpvdfprghtvfaegepgdrlyiiisgkvkigrrapdgrenlltimgpsdmfgelsifdpgprtssattitevravsmdrdalrswiadrpeiseqllrvlarrlrrtnnnladliftdvpgrvakqllqlaqrfgtqeggalrvthdltqeeiaqlvgaSRETvNKaladfahrgwirlegksvlisdserlarrar
interface signature	SRETNK/SRETNK

Estimated binding specificities ?

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# IC=11.668 IC/col=0.729 n_of_columns=16

specificity:

A |   7   7   0   0  73   7  24  24  24  24  24   0   0  96   0  96
C |  73   7   0   0   9  75  24  24  24  24  24   0  96   0  96   0
G |   9  75   0  96   7   7  24  24  24  24  24   0   0   0   0   0
T |   7   7  96   0   7   7  24  24  24  24  24  96   0   0   0   0

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updated Mon Sep 9 19:15:43 2024