| structure name | RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DATP OPPOSITE GUANIDINOHYDANTOIN (DNA polymerase) |
| reference | Konigsberg et al. Biochemistry 49 8554 2010 |
| source | Enterobacteria phage RB69 |
| experiment | X-ray (resolution=2.00, R-factor=0.196) |
| structural superfamily | DNA/RNA polymerases;Ribonuclease H-like; |
| sequence family | DNA polymerase family B, exonuclease do; |
| redundant complexes | 2dtu 1q9y 2dy4 2p5g 2p5o 3cq8 3l8b 2ozs 2oyq 1q9x 3lzj 3lds 3lzi 2ozm 1ig9 1clq 3cfr 3cfp |
| reference complex | 3qex_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix format----------EC----------KC--IC--RCIC----DA--KA----------FA----------------------------------------------------NT-- +-----------3nae_A +----2 ------------------------RT------FTQT----------------RT--SG------------------------IGNGAGYG--AA----KA--RG--RC--NA L ! ! +-----3k59_A +----------3 +-----1 IT------------------------------------------------------QGQAVT--FTITQT------------IGNGSGYGFTVAKTLTKARGRC------NC L ! ! +-----3iay_A +-4 ! --PGKG--NT--NTFC------------DARA----YT--RG--------WG----------WG------------------------------------------------ ! ! +----------------2xhb_A +-5 ! ------LC--------NGKG----------------MG------RCFCEC-------------------------------------------------------------- ! ! +---------------------------1kln_A --6 ! --------------------NG--IA------------YG----------------------------------------------------------------LT------ ! +----------------------------2py5_B ! ----------------------------------------------------------------------RGNCYGATCTRG------------------------------ L +-----------------------------2wt7_B |
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updated Thu Sep 12 17:44:59 2024