3odh_EF : 3D-footprint complex

structure name	STRUCTURE OF OKRAI/DNA COMPLEX
reference	Aggarwal et al. 'Nucleic 39 712 2011
source	Oceanobacter kriegii
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	Restriction endonuclease-like;
reference complex	3odh_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3odh_E interface=104,110,137,141,142,143,144,189,191, mkikrievlinngsvpgipmilneiqdaiktvswpegnnsfvinpvrkgngvkpiknscmrhlhqkgwalehpvrikaemrpgpldavkmiggkafalewetgNissshRainkmvmgmlerviiggvlilpsrdmYnylTDRVgnfrelepyfsvwrqfnlkdaylaiveiehdsvdaqvslipkgtDgRair > 3odh_F interface=81,104,106,110,134,137,141,142,143, mkikrievlinngsvpgipmilneiqdaiktvswpegnnsfvinpvrkgngvkpiknscmrhlhqkgwalehpvrikaemRpgpldavkmiggkafalewetgNiSsshRainkmvmgmlerviiggvlilpsRdmYnylTDRvgnfrelepyfsvwrqfnlkdaylaiveiehdsvdaqvslipkgtdgrair
interface signature	NRYTDRVDR/RNSRRYTDR

Estimated binding specificities ?

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# IC=10.912 IC/col=1.091 n_of_columns=10

specificity:

A |  12  60   0   0   0  96   0   0   0  96
C |  12  12  12   0   0   0   0  96  96   0
G |  12  12   0  96  96   0   0   0   0   0
T |  60  12  84   0   0   0  96   0   0   0

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updated Mon Sep 9 19:22:43 2024