| structure name | STRUCTURE OF OKRAI/DNA COMPLEX (OkrAI endonuclease) |
| reference | Aggarwal et al. 'Nucleic 39 712 2011 |
| source | Oceanobacter kriegii |
| experiment | X-ray (resolution=2.30, R-factor=0.159) |
| structural superfamily | Restriction endonuclease-like; |
| sequence family | Restriction endonuclease BamHI; |
| multimeric complexes | 3odh_AB 3odh_EF |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RNSRRYTDR |
Estimated binding specificities ?
| contact |  |
A | 0 0 0 96 24 24 9 24 9 67 C | 0 0 0 0 24 24 67 24 9 9 G | 0 96 96 0 24 24 11 24 11 11 T | 96 0 0 0 24 24 9 24 67 9scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: OKRAI | ||
| TATGGATCCATA | PubMed | 3odh_F(9.57e-09), 3odh_AB(6.26e-08) |
Dendrogram of similar interfaces ?
matrix format--RT------NG------RGRTYTTTDCRG L +------------------3odh_F +-----1 ----RC----------RT------------ L ! +------------------4dav_B --3 AA----RAKGRGECRG-------------- L ! +--------------------3bm3_A +---2 ------------AAEARG------------ L +--------------------5dwa_A |
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updated Sun Aug 3 07:20:10 2025