3q5f_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE SALMONELLA TRANSCRIPTIONAL REGULATOR SLYA IN COMPLEX WITH DNA
reference	Duguid et al. J.Biol.Chem. 286 22178 2011
source	Salmonella enterica
experiment	X-ray (resolution=2.96, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	3q5f_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3q5f_A interface=58,59,60,61,63,64,85, esplgsdlarlvriwralidhrlkpleltqthwvtlhnihqlppdqsqiqlakaigiEQPSlVRtldqledkglisrqtcasdrRakrikltekaepliaemeevihktrgeilagisseeiellikliaklehnimelhs > 3q5f_B interface=15,57,58,59,60,62,63,84, splgsdlarlvriwRalidhrlkpleltqthwvtlhnihqlppdqsqiqlakaigiEQPSlVRtldqledkglisrqtcasdrRakrikltekaepliaemeevihktrgeilagisseeiellikliaklehnimelhs
interface signature	EQPSVRR/REQPSVRR

Estimated binding specificities ?

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# IC=17.280 IC/col=0.864 n_of_columns=20

specificity:

A |  87   4  24  24   5   0  96   2   0   0   0   0   5   0  84  73  24  24  11  87
C |   2   2  24  24   2   0   0   2  96   0   0   0  84   0   2  11  24  24   5   2
G |   2   0  24  24   2   0   0  87   0   0   0  96   5   0   5   2  24  24   2   5
T |   5  90  24  24  87  96   0   5   0  96  96   0   2  96   5  10  24  24  78   2

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updated Tue Jul 29 22:26:12 2025