3q5f_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE SALMONELLA TRANSCRIPTIONAL REGULATOR SLYA IN COMPLEX WITH DNA
reference	Duguid et al. J.Biol.Chem. 286 22178 2011
source	Salmonella enterica
experiment	X-ray (resolution=2.96, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	3q5f_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3q5f_A interface=58,59,60,61,63,64,85, esplgsdlarlvriwralidhrlkpleltqthwvtlhnihqlppdqsqiqlakaigiEQPSlVRtldqledkglisrqtcasdrRakrikltekaepliaemeevihktrgeilagisseeiellikliaklehnimelhs > 3q5f_B interface=15,57,58,59,60,62,63,84, splgsdlarlvriwRalidhrlkpleltqthwvtlhnihqlppdqsqiqlakaigiEQPSlVRtldqledkglisrqtcasdrRakrikltekaepliaemeevihktrgeilagisseeiellikliaklehnimelhs
interface signature	EQPSVRR/REQPSVRR

Estimated binding specificities ?

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# IC=16.997 IC/col=0.850 n_of_columns=20

specificity:

A |   2  78  24  24   9   4  96   2   0  96  93   0   4   0  96  88  24  24  91   2
C |   2   2  24  24   9   0   0  12  96   0   2   0  88   0   0   2  24  24   3   4
G |   4  14  24  24  12   4   0  71   0   0   0  96   2   0   0   2  24  24   0   2
T |  88   2  24  24  66  88   0  11   0   0   1   0   2  96   0   4  24  24   2  88

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updated Wed Jun 24 17:48:49 2026