3q5f_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE SALMONELLA TRANSCRIPTIONAL REGULATOR SLYA IN COMPLEX WITH DNA
reference	Duguid et al. J.Biol.Chem. 286 22178 2011
source	Salmonella enterica
experiment	X-ray (resolution=2.96, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	3q5f_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3q5f_A interface=58,59,60,61,63,64,85, esplgsdlarlvriwralidhrlkpleltqthwvtlhnihqlppdqsqiqlakaigiEQPSlVRtldqledkglisrqtcasdrRakrikltekaepliaemeevihktrgeilagisseeiellikliaklehnimelhs > 3q5f_B interface=15,57,58,59,60,62,63,84, splgsdlarlvriwRalidhrlkpleltqthwvtlhnihqlppdqsqiqlakaigiEQPSlVRtldqledkglisrqtcasdrRakrikltekaepliaemeevihktrgeilagisseeiellikliaklehnimelhs
interface signature	EQPSVRR/REQPSVRR

Estimated binding specificities ?

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# IC=16.893 IC/col=0.845 n_of_columns=20

specificity:

A |   3  80  24  24  11   4  96   4   0  96  94   0   4   0  96  90  24  24  90   1
C |   3   1  24  24  20   3   0   9  96   0   1   0  90   0   0   4  24  24   1   3
G |   4  11  24  24   9   1   0  72   0   0   0  96   1   0   0   1  24  24   1   6
T |  86   4  24  24  56  88   0  11   0   0   1   0   1  96   0   1  24  24   4  86

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updated Mon Sep 9 19:28:17 2024