3qfq_ABE : 3D-footprint complex

structure name	ASYMMETRIC ASSEMBLY OF MERKEL CELL POLYOMAVIRUS LARGE T-ANTIGEN ORIGIN BINDING DOMAINS AT THE VIRAL ORIGIN
reference	Harrison et al. J.Mol.Biol. 409 529 2011
source	Merkel cell polyomavirus
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	3qfq_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3qfq_A interface=21,22,23,24,72, tpvptdfpidlsdylshavySNKTvscfaiyttsdkaielydkiekfkvdfksrhacelgcillfitlskhRvsaiknfcstfctisflickgvnkmpemynnlckppykllqenkpll > 3qfq_B interface=21,22,23,24,72, tpvptdfpidlsdylshavySNKTvscfaiyttsdkaielydkiekfkvdfksrhacelgcillfitlskhRvsaiknfcstfctisflickgvnkmpemynnlckppykllqenkplln > 3qfq_E interface=19,20,21,22,70, vptdfpidlsdylshavySNKTvscfaiyttsdkaielydkiekfkvdfksrhacelgcillfitlskhRvsaiknfcstfctisflickgvnkmpemynnlckppykllqenkpll
interface signature	SNKTR/SNKTR/SNKTR

Estimated binding specificities ?

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# IC=18.587 IC/col=0.845 n_of_columns=22

specificity:

A |   0  24   0   7   0   0  24  24  24  96   0   0   9   4   0  24  96   0  10  14   6  72
C |   0  24   0  76  96   0  24  24  24   0   0  96  86  81  96  24   0   0  86  76   4   9
G |  96  24  96   9   0   0  24  24  24   0  96   0   1   7   0  24   0  96   0   0  14   4
T |   0  24   0   4   0  96  24  24  24   0   0   0   0   4   0  24   0   0   0   6  72  11

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updated Wed Jun 24 17:49:03 2026