3rmd_C : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A REPLICATIVE DNA POLYMERASE BOUND TO DNA CONTAINING THYMINE GLYCOL (DNA polymerase)
reference	Wallace et al.
source	Enterobacteria phage RB69
experiment	X-ray (resolution=2.98, R-factor=?)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
sequence family	DNA polymerase family B, exonuclease do;
reference complex	3qex_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3rmd_C interface=279,361,565,567,706,800, mkefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpctrklfanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdievtspdgfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggdevpseiidkiiympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifgestakrlsphrktrvkvienmygsreiitlfgisvldyidlykKfsftnqpsysldyisefelnvgklkydgpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqsvfsPiktwdaiifnslkeqnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfkvaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrngeiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmtaqinrkllinSlYgalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkKryalnvwdmegtryaepklkimgletqksstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvggfpgpKcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteitdlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmf
interface signature	KPSYKK

Estimated binding specificities ?

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# IC=3.300 IC/col=0.367 n_of_columns=9

specificity:

A |   0   1   9  24  24  24  24  44  14
C |   0   7   7  24  24  24  24  22  51
G |  96   0  73  24  24  24  24   8   7
T |   0  88   7  24  24  24  24  22  24

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updated Sat Aug 2 04:58:39 2025