3sjm_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE ANALYSIS OF TRF2-DBD-DNA COMPLEX
reference	Sliverman et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=1.35, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1vfc_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3sjm_A interface=2,40,43,44,47,48,51, kKqkwtveesewvkagvqkygegnwaaisknypfvnrtaVmiKDrwRTmkRlgmn > 3sjm_B interface=2,40,43,44,47,48,51, kKqkwtveesewvkagvqkygegnwaaisknypfvnrtaVmiKDrwRTmkRlgmn
interface signature	KVKDRTR/KVKDRTR

Estimated binding specificities ?

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# IC=12.748 IC/col=0.981 n_of_columns=13

specificity:

A |   0  78   0   0   0  12  24  96   0   0   0   6   6
C |   0   6   0   0   0  66  24   0   0   0   0  12  12
G |   0   6  96  96  96  12  24   0  96  96  96  12   6
T |  96   6   0   0   0   6  24   0   0   0   0  66  72

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updated Fri Dec 13 17:25:03 2024