3sjm_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE ANALYSIS OF TRF2-DBD-DNA COMPLEX
reference	Sliverman et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=1.35, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1vfc_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3sjm_A interface=2,40,43,44,47,48,51, kKqkwtveesewvkagvqkygegnwaaisknypfvnrtaVmiKDrwRTmkRlgmn > 3sjm_B interface=2,40,43,44,47,48,51, kKqkwtveesewvkagvqkygegnwaaisknypfvnrtaVmiKDrwRTmkRlgmn
interface signature	KVKDRTR/KVKDRTR

Estimated binding specificities ?

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# IC=13.416 IC/col=1.032 n_of_columns=13

specificity:

A |  75  69   0   0   0   0  61   8   0   0   0   6  96
C |   4   8  96  96  96   0  13   8  96  96  96   4   0
G |  13   4   0   0   0   0  14  69   0   0   0   4   0
T |   4  15   0   0   0  96   8  11   0   0   0  82   0

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updated Mon Sep 9 19:57:10 2024