3swp_ABCD : 3D-footprint complex

structure name	ANAC019 NAC DOMAIN IN COMPLEX WITH DNA
reference	Lo Leggio et al. Biochem.J. 444 395 2012
source	Arabidopsis thaliana
experiment	X-ray (resolution=4.11, R-factor=?)
structural superfamily	NAC domain;
reference complex	3swp_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3swp_A interface=73,82,84,86,106,110,111,115, pltqlslppgfrfyptdeelmvqylcrkaagydfslqliaeidlykfdpwvlpnkalfgekewyffsprdrpNrvagsgywKaTgTdkiistegqrvgikkalvfYigkAPkgtKtnwimheyrliepsddwvlcriykkq > 3swp_B interface=72,81,82,83,105, pltqlslppgfrfyptdeelmvqylcrkaagydfslqliaeidlykfdpwvlpnkalfgekewyffsprdpNrvagsgywKATgtdkiistegqrvgikkalvfYigkapkgtktnwimheyrliepsddwvlcriykkq > 3swp_C interface= lppgfrfyptdeelmvqylcrkaagydfslqliaeidlykfdpwvlpnkalfgekewyffsprdrpnrvagSgywkatgtDKIistegqrvgikkalvfyigkaPkgtktnwimheyrliepsddwvlcriykkq > 3swp_D interface=72,81,82,83,85,105,114, pltqlslppgfrfyptdeelmvqylcrkaagydfslqliaeidlykfdpwvlpnkalfgekewyffsprdpNrvagsgywKATgTdkiistegqrvgikkalvfYigkapkgtKtnwimheyrliepsddwvlcriykkq
interface signature	NKTTYAPK/NKATY/SDKIP/NKATTYK

Estimated binding specificities ?

readout + contact

# IC=8.912 IC/col=0.557 n_of_columns=16

specificity:

A |   0   0   7   0   7  24  24  24   0  24  24  24  73  24   7   0
C |  96   0   7  96   9  24  24  24   0  24  24  24   7  24  73   0
G |   0   0   9   0  73  24  24  24   0  24  24  24   9  24   7  96
T |   0  96  73   0   7  24  24  24  96  24  24  24   7  24   9   0

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updated Mon Sep 9 19:59:07 2024