3swp_ABCD : 3D-footprint complex

structure name	ANAC019 NAC DOMAIN IN COMPLEX WITH DNA
reference	Lo Leggio et al. Biochem.J. 444 395 2012
source	Arabidopsis thaliana
experiment	X-ray (resolution=4.11, R-factor=?)
structural superfamily	NAC domain;
reference complex	3swp_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3swp_A interface=73,82,84,86,106,110,111,115, pltqlslppgfrfyptdeelmvqylcrkaagydfslqliaeidlykfdpwvlpnkalfgekewyffsprdrpNrvagsgywKaTgTdkiistegqrvgikkalvfYigkAPkgtKtnwimheyrliepsddwvlcriykkq > 3swp_B interface=72,81,82,83,105, pltqlslppgfrfyptdeelmvqylcrkaagydfslqliaeidlykfdpwvlpnkalfgekewyffsprdpNrvagsgywKATgtdkiistegqrvgikkalvfYigkapkgtktnwimheyrliepsddwvlcriykkq > 3swp_C interface= lppgfrfyptdeelmvqylcrkaagydfslqliaeidlykfdpwvlpnkalfgekewyffsprdrpnrvagSgywkatgtDKIistegqrvgikkalvfyigkaPkgtktnwimheyrliepsddwvlcriykkq > 3swp_D interface=72,81,82,83,85,105,114, pltqlslppgfrfyptdeelmvqylcrkaagydfslqliaeidlykfdpwvlpnkalfgekewyffsprdpNrvagsgywKATgTdkiistegqrvgikkalvfYigkapkgtKtnwimheyrliepsddwvlcriykkq
interface signature	NKTTYAPK/NKATY/SDKIP/NKATTYK

Estimated binding specificities ?

readout + contact

# IC=10.778 IC/col=0.674 n_of_columns=16

specificity:

A |   0  13  24   0  15  13  24  96  24  24  24   4   0  87  96   0
C |  96  13  24   4   8  65  24   0  24  24  24  82   0   4   0   0
G |   0  57  24   0   4   8  24   0  24  24  24   4  96   5   0  96
T |   0  13  24  92  69  10  24   0  24  24  24   6   0   0   0   0

scan!

home
updated Mon Jan 5 06:40:18 2026