3swp_ABCD : 3D-footprint complex

structure name	ANAC019 NAC DOMAIN IN COMPLEX WITH DNA
reference	Lo Leggio et al. Biochem.J. 444 395 2012
source	Arabidopsis thaliana
experiment	X-ray (resolution=4.11, R-factor=?)
structural superfamily	NAC domain;
reference complex	3swp_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3swp_A interface=73,82,84,86,106,110,111,115, pltqlslppgfrfyptdeelmvqylcrkaagydfslqliaeidlykfdpwvlpnkalfgekewyffsprdrpNrvagsgywKaTgTdkiistegqrvgikkalvfYigkAPkgtKtnwimheyrliepsddwvlcriykkq > 3swp_B interface=72,81,82,83,105, pltqlslppgfrfyptdeelmvqylcrkaagydfslqliaeidlykfdpwvlpnkalfgekewyffsprdpNrvagsgywKATgtdkiistegqrvgikkalvfYigkapkgtktnwimheyrliepsddwvlcriykkq > 3swp_C interface= lppgfrfyptdeelmvqylcrkaagydfslqliaeidlykfdpwvlpnkalfgekewyffsprdrpnrvagSgywkatgtDKIistegqrvgikkalvfyigkaPkgtktnwimheyrliepsddwvlcriykkq > 3swp_D interface=72,81,82,83,85,105,114, pltqlslppgfrfyptdeelmvqylcrkaagydfslqliaeidlykfdpwvlpnkalfgekewyffsprdpNrvagsgywKATgTdkiistegqrvgikkalvfYigkapkgtKtnwimheyrliepsddwvlcriykkq
interface signature	NKTTYAPK/NKATY/SDKIP/NKATTYK

Estimated binding specificities ?

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# IC=10.617 IC/col=0.664 n_of_columns=16

specificity:

A |   0  13  24   0  10   9  24  96  24  24  24   4   0  82  96   0
C |  96  13  24   0  13  61  24   0  24  24  24  84   0   4   0   0
G |   0  56  24   0   8  13  24   0  24  24  24   4  96   4   0  96
T |   0  14  24  96  65  13  24   0  24  24  24   4   0   6   0   0

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updated Wed Jun 24 18:24:37 2026