3vek_C : 3D-footprint complex

structure name	BOTH ZN FINGERS OF GATA1 BOUND TO PALINDROMIC DNA RECOGNITION SITE, P1 CRYSTAL FORM (Erythroid transcription factor)
reference	Wilkinson-White et al. 'To ? ? ?
source	Mus musculus
experiment	X-ray (resolution=2.63, R-factor=0.237)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
sequence family	GATA zinc finger;
reference complex	3vd6_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3vek_C interface=13,14,16,26,30,53,54,56,66,70,73,74,91,93, arecvncgatatPLwRrdrtghylcNacgLyhkmngqnrpltqctncqttttTLwRrnasgdpvcNacgLyfKLhqvnrpltmrkdgiqtRnRkas
interface signature	PLRNLTLRNLKLRR

Estimated binding specificities ?

readout + contact

# IC=11.096 IC/col=1.110 n_of_columns=10

specificity:

A |   0   0  96   0   0  96   0  96  13  54
C |   0   0   0   0  96   0   0   0  13  13
G |   0   0   0   0   0   0  96   0  16  13
T |  96  96   0  96   0   0   0   0  54  16

scan!

home
updated Mon Dec 18 09:27:24 2023