interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameTHE NUCLEOSOME CONTAINING HUMAN TSH2B
(HISTONE H2B TYPE 1-A)
referenceKurumizaka et al. 'Acta 70 444 2014
sourceHOMO SAPIENS
experimentX-ray (resolution=2.80, R-factor=0.244)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes3wkj_ABCDEFGH 5gsu_ABCDEFGH 5gt3_ABCDEFGH
redundant complexes5gsu 5gt3
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RG----         +-----------------------------7ccr_H    
               +-8 
  --RG--       ! +-----------------------------8upf_G    
               ! 
  --RT--       !                            +8u14_G    
               !          +-----------------2 
  --RC--     --9       +--5                 +7yqk_C    
               !       !  ! 
  --RA--       !       !  +------------------7e9c_F    
               !       ! 
  --RARA       !       !                       +6a5l_g    
               +-------7                     +-1 
  --RG--               !    +----------------3 +8txv_G    
                       !    !                ! 
  --RG--               ! +--4                +8rbx_V    
                       ! !  ! 
  --RC--               +-6  +-----------------7ux9_E    
                         ! 
  --RT--                 +--------------------6px1_A    
             

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updated Sat Jan 10 06:39:50 2026