interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameTHE NUCLEOSOME CONTAINING HUMAN TSH2B
(HISTONE H2B TYPE 1-A)
referenceKurumizaka et al. 'Acta 70 444 2014
sourceHOMO SAPIENS
experimentX-ray (resolution=2.80, R-factor=0.244)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes3wkj_ABCDEFGH 5gsu_ABCDEFGH 5gt3_ABCDEFGH
redundant complexes5gsu 5gt3
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RA--       +-----------------------------6g0l_D    
                   !  
  RT--------       !                           +-----9fgq_D    
                   !                     +-----4 
  ----RA----       !                     !     !     +1zla_C    
                   !             +-------5     +-----2 
  ----RG----       !             !       !           +8ox0_C    
                   !             !       ! 
  ----RA--RA     -10           +-6       +-----------6a5l_g    
                   !           ! ! 
  ----RT----       !           ! !                   +8u14_G    
                   !         +-7 +-------------------1 
  ----RG----       !         ! !                     +5x0y_G    
                   !         ! ! 
  ----RT----       !       +-8 +-------------------8grq_A    
                   !       ! ! 
  ----RG----       !       ! !                    +8txv_G    
                   +-------9 +--------------------3 
  ----RG----               !                      +8jla_C    
                           ! 
  --LCRT----               +---------------------8hr1_E    
                 

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updated Sun Aug 3 07:41:24 2025