5gt3_ABCDEFGH
citing 3d-footprint
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structure name
CRYSTAL STRUCTURE OF NUCLEOSOME PARTICLE IN THE PRESENCE OF HUMAN TESTIS-SPECIFIC HISTONE VARIANT, HTH2B
reference
Kumarevel et al. 'Biophys. 221 41 2017
source
HOMO SAPIENS
experiment
X-ray (resolution=2.91, R-factor=?)
structural superfamily
Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;
reference complex
3wkj_D
5o9g_E
5o9g_F
5o9g_G
5z3u_A
6ftx_B
6g0l_M
6iro_A
6nqa_A
6pww_K
6r25_E
6r8y_H
6upk_H
6x0n_f
6yov_C
7at8_D
7eg6_A
7egp_S
7jzv_N
7nkx_a
7nkx_f
7otq_E
7u0g_M
7unc_a
7und_e
7vdt_B
7xcr_F
7xzx_N
7xzz_N
7zs9_e
8a3y_a
8aag_A
8atf_Q
8bvw_e
8byq_e
8ceo_r
8cww_A
8g57_E
8he5_a
8jh2_e
8jhf_A
8siy_G
8xgc_4
links to other resources
NAKB
PDIdb
DNAproDB
protein sequence
> 5gt3_A interface=2,3,28,46, pHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 5gt3_B interface=24, lrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5gt3_C interface=30,65, kaktrssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlairndeelnkllgkvtiaqggvlpniqavllpk > 5gt3_D interface= rtrkesysiyiykvlkqvhpdtgisskamSimnsfvtdiferiaseasrlahyskrstissreiQtavrlllpgelakhavsegtkavtkytssk > 5gt3_E interface=4,29,47, kphRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 5gt3_F interface=28, hrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5gt3_G interface= trssraglqfpvgrvhrllrkgnyserVgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgkvtiaqggvlpniqavllpk > 5gt3_H interface= kesysiyiykvlkqvhpdtgisskamsImnsfvtdiferiaseasrlahyskrstissreiqtavrlllpgelakhavsegtkavtkytssk
3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.
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updated Tue Sep 10 04:23:17 2024