interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF NUCLEOSOME CORE PARTICLE CONSISTING OF MOUSE TESTIS SPECIFIC HISTONE VARIANTS H2AA AND H2BA
(HISTONE H2A)
referenceKumarevel et al. Biochem.Biophys.Res.Commun. 464 929 2015
sourceMUS MUSCULUS
experimentX-ray (resolution=2.81, R-factor=0.212)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes3x1t_ABCDEFGH 3x1u_ABCDEFGH
redundant complexes3x1u_G
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RG--                               +8txv_G    
                         +---------------1 
  ----RG--       +-------4               +8upf_G    
                 !       ! 
  ----RC--       !       +---------------7yqk_C    
                 ! 
  ----RT--       !                      +-8u14_G    
                 !        +-------------3 
  ----RARA     --8        !             ! +6a5l_g    
                 !   +----5             +-2 
  HGRTRG--       !   !    !               +8rbx_V    
                 ! +-6    ! 
  ----RA--       ! ! !    +---------------7e9c_F    
                 +-7 ! 
  ----RC--         ! +--------------------7ux9_E    
                   ! 
  ----RT--         +----------------------6px1_A

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updated Sat Jan 10 06:43:04 2026