3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

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updated Wed Jun 24 19:44:09 2026

structure name	CRYSTAL STRUCTURE OF NUCLEOSOME CORE PARTICLE CONSISTING OF MOUSE TESTIS SPECIFIC HISTONE VARIANTS H2AA AND H2BA
reference	Kumarevel et al. Biochem.Biophys.Res.Commun. 464 929 2015
source	HOMO SAPIENS / MUS MUSCULUS
experiment	X-ray (resolution=2.81, R-factor=?)
structural superfamily	Histone-fold;lambda repressor-like DNA-binding domains;p53-like transcription factors;
reference complex	3x1t_G 3x1t_H 5o9g_E 5o9g_F 6a5l_e 6ir9_e 6nqa_A 6pww_K 6r8y_H 6x0n_f 6yov_C 7eg6_A 7egp_S 7nkx_a 7nkx_f 7u0g_M 7unc_a 7und_e 7vdt_B 7xsx_a 7xzx_N 7zs9_e 8aag_A 8atf_Q 8bvw_e 8ceo_r 8he5_a 8jh2_e 8jhf_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3x1t_A interface=2,3,28,46, pHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 3x1t_B interface=24, lrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 3x1t_C interface=29, vksrssraglqfpvgrvhrllrqgnyaqRigagapvylaavleyltaevlelagnaardnkktritprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 3x1t_D interface= rkesysiyiykvlkqvhpdtgisskamsImnsfvtdiferiaseasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytssk > 3x1t_E interface=3,4,28,46, phRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 3x1t_F interface=30, krhrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 3x1t_G interface=29,64, vksrssraglqfpvgrvhrllrqgnyaqRigagapvylaavleyltaevlelagnaardnkktRitprhlqlairndeelnkllgrvtiaqggvlpniqavllpkk > 3x1t_H interface=1, Rkesysiyiykvlkqvhpdtgisskamsimnsfvtdiferiaseasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytssk