interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF NUCLEOSOME CORE PARTICLE CONSISTING OF MOUSE TESTIS SPECIFIC HISTONE VARIANTS H2AA AND H2BA
(HISTONE H2B TYPE 1-A)
referenceKumarevel et al. Biochem.Biophys.Res.Commun. 464 929 2015
sourceMUS MUSCULUS
experimentX-ray (resolution=2.81, R-factor=0.212)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes3x1t_ABCDEFGH 3x1v_ABCDEFGH
redundant complexes3x1v
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RA--         +-----------------------------6g0l_D    
                 +-8 
  --RG----       ! +-----------------------------8ox0_C    
                 ! 
  --RA----       !                            +1zla_C    
               --9             +--------------2 
  --RG----       !   +---------4              +5x0y_G    
                 !   !         ! 
  --RG----       !   !         +---------------8jla_C    
                 !   ! 
  --RG----       +---7                         +8txv_G    
                     !    +--------------------1 
  --RA--RA           ! +--5                    +6a5l_g    
                     ! !  ! 
  --RT----           +-6  +--------------------8grq_A    
                       ! 
  --RT----             !           +-----------8u14_G    
                       +-----------3 
  LCRT----                         +-----------8hr1_E    
               

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updated Sun Aug 3 07:46:28 2025