interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF NUCLEOSOME CORE PARTICLE CONSISTING OF MOUSE TESTIS SPECIFIC HISTONE VARIANTS H2AA AND H2BA
(HISTONE H2B TYPE 1-A)
referenceKumarevel et al. Biochem.Biophys.Res.Commun. 464 929 2015
sourceMUS MUSCULUS
experimentX-ray (resolution=2.81, R-factor=0.212)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes3x1t_ABCDEFGH 3x1v_ABCDEFGH
redundant complexes3x1v
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RC--         +-----------------------------7yqk_C    
               +-7 
  --RG--       ! +-----------------------------8upf_G    
               ! 
  --RG--       !                            +8txv_G    
               !           +----------------2 
  --RARA       !           !                ! +6a5l_g    
             --8         +-4                +-1 
  HGRG--       !         ! !                  +8rbx_V    
               !         ! ! 
  --RT--       !   +-----5 +-----------------6px1_A    
               !   !     ! 
  --RT--       !   !     !       +-----------8u14_G    
               +---6     +-------3 
  --RC--           !             +-----------7ux9_E    
                   ! 
  --RA--           +-------------------------7e9c_F    
             

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updated Sat Jan 10 06:45:24 2026