3zh2_CD : 3D-footprint complex

structure name	STRUCTURE OF PLASMODIUM FALCIPARUM LACTATE DEHYDROGENASE IN COMPLEX WITH A DNA APTAMER
reference	Cheung et al. Proc.Natl.Acad.Sci.USA 110 15967 2013
source	PLASMODIUM FALCIPARUM
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	LDH C-terminal domain-like;NADP-binding Rossmann-fold domains;
reference complex	3zh2_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3zh2_C interface=33,34,35,36,66,79,83,84,85,87,88,89,90,92,100,104,231, apkakivlvgsgmiggvmatlivqknlgdvvlFDIVknmphgkaldtshtnvmaysnckvsgsntYddlagadvvivtAgftKAPgKSDKeWnrddllpLnnkImieigghikkncpnafiivvtnpvdvmvqllhqhsgvpknkiiglggvldtsrlkyyisqklnvcprdvnahivgahgnkmvllkryitvggiplqefinnklisdaeleaifdrtvntaleivnlHaspyvapaaaiiemaesylkdlkkvlicstllegqyghsdifggtpvvlgangveqvielqlnseekakfdeaiaetkrmkala > 3zh2_D interface=34,35,38,65,78,80,82,100,103, pkakivlvgsgmiggvmatlivqknlgdvvlfdIVknMphgkaldtshtnvmaysnckvsgsntYddlagadvvivtAgFtKapdkewnrddllplnnkImiEigghikkncpnafiivvtnpvdvmvqllhqhsgvpknkiiglggvldtsrlkyyisqklnvcprdvnahivgahgnkmvllkryitvggiplqefinnklisdaeleaifdrtvntaleivnlhaspyvapaaaiiemaesylkdlkkvlicstllegqyghsdifggtpvvlgangveqvielqlnseekakfdeaiaetkrmkala
interface signature	FDIVYAKAPKSDKWLIH/IVMYAFKIE

Estimated binding specificities ?

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# IC=17.332 IC/col=0.867 n_of_columns=20

specificity:

A |   9  11   0   0   0   0  24   0  24  24  24   0  96   0  96   0  24   9  96   0
C |   9   9  96   0   0   0  24   0  24  24  24  96   0   0   0   0  24  11   0  96
G |  69  67   0  96  96   0  24  96  24  24  24   0   0   0   0  96  24  67   0   0
T |   9   9   0   0   0  96  24   0  24  24  24   0   0  96   0   0  24   9   0   0

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updated Mon Sep 9 21:17:02 2024