3zkc_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MASTER REGULATOR FOR BIOFILM FORMATION SINR IN COMPLEX WITH DNA.
reference	Rodrigues et al. J.Biol.Chem. 288 10766 2013
source	BACILLUS SUBTILIS
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3zkc_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3zkc_A interface=17,26,27,28,29,31,35,38, igqrikqyrkekgyslSelaekagvAKSYlSsieRnlQtnpsiqflekvsavldvsvhtll > 3zkc_B interface=18,27,28,29,30,32,36,39, migqrikqyrkekgyslSelaekagvAKSYlSsieRnlQtnpsiqflekvsavldvsvhtlld
interface signature	SAKSYSRQ/SAKSYSRQ

Estimated binding specificities ?

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# IC=8.439 IC/col=0.603 n_of_columns=14

specificity:

A |   8   6   0  24  12  24  24  24  24  66   1  96  96   0
C |  12   1  96  24  64  24  24  24  24  12   0   0   0  96
G |  12   6   0  24  14  24  24  24  24   6  89   0   0   0
T |  64  83   0  24   6  24  24  24  24  12   6   0   0   0

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updated Mon Sep 9 21:17:19 2024