3zkc_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MASTER REGULATOR FOR BIOFILM FORMATION SINR IN COMPLEX WITH DNA.
reference	Rodrigues et al. J.Biol.Chem. 288 10766 2013
source	BACILLUS SUBTILIS
experiment	X-ray (resolution=3.00, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3zkc_A interface=17,26,27,28,29,31,35,38, igqrikqyrkekgyslSelaekagvAKSYlSsieRnlQtnpsiqflekvsavldvsvhtll > 3zkc_B interface=18,27,28,29,30,32,36,39, migqrikqyrkekgyslSelaekagvAKSYlSsieRnlQtnpsiqflekvsavldvsvhtlld
interface signature	SAKSYSRQ/SAKSYSRQ

Estimated binding specificities ?

readout + contact

# IC=8.501 IC/col=0.607 n_of_columns=14

specificity:

A |   6   6   0  24  12  24  24  24  24  64   1  96  96   0
C |  12   0  96  24  64  24  24  24  24   6   0   0   0  96
G |  12   6   0  24  14  24  24  24  24  14  89   0   0   0
T |  66  84   0  24   6  24  24  24  24  12   6   0   0   0

scan!

home
updated Fri Dec 13 18:51:11 2024