| structure name | CRYSTAL STRUCTURE OF THE MASTER REGULATOR FOR BIOFILM FORMATION SINR IN COMPLEX WITH DNA. (HTH-TYPE TRANSCRIPTIONAL REGULATOR SINR) |
| reference | Rodrigues et al. J.Biol.Chem. 288 10766 2013 |
| source | BACILLUS SUBTILIS |
| experiment | X-ray (resolution=3.00, R-factor=0.243) |
| structural superfamily | lambda repressor-like DNA-binding domains; |
| sequence family | Helixturnhelix; |
| multimeric complexes | 3zkc_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SAKSYSRQ |
Estimated binding specificities ?
readout + contact |  |
A | 6 7 7 10 18 C | 6 7 7 63 18 G | 78 8 8 10 18 T | 6 74 74 13 42scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: SINR CRYSTAL STRUCTURE OF THE MASTER REGULATOR FOR BIOFILM FORMATION SINR IN COMPLEX WITH DNA. mining | ||
| TTTGTTCTCTAAAGAGAACTTA | PubMed | 3zkc_A(8.03e-05) |
Dendrogram of similar interfaces ?
matrix format----SGAAKGSGYGST--RTQG------ L +3zkc_A +-2 --QT--STNTVTATSTQTRTETTT---- L ! ! +2r1j_L +----3 +-1 ----ATATTTPTTTNT------------ L ! ! +6fix_D +-4 ! ----RTTT--AT--STRG----TT---- L ! ! +6chv_D +---5 ! RT--------RG----NT----ETRTYA L ! ! +-----7f9h_B +------6 ! ----AT--QAAT--SA------------ ! ! +-----4z5h_A --7 ! ----STKCQAAT--SA------------ L ! +---------3dnv_B ! ------SGKGSCQTSTRG---------- L +----------------6w1a_A |
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updated Tue Dec 19 08:33:23 2023