4aij_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ROVA FROM YERSINIA IN COMPLEX WITH A ROVA PROMOTER FRAGMENT
reference	Heroven et al. J.Biol.Chem. 287 35796 2012
source	YERSINIA PSEUDOTUBERCULOSIS
experiment	X-ray (resolution=2.05, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4aik_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4aij_A interface=48,57,58,59,62,84, stlgsdlarlvrvwralidhrlkpleltqthwvtlyninrlppeqsqIqlakaigiEQPslVrtldqleekglitrhtsandrRakriklteqsspiieqvdgvisstrkeilggissdeiavlsglidklekniiqlq > 4aij_B interface=59,60,61,63,64, estlgsdlarlvrvwralidhrlkpleltqthwvtlyninrlppeqsqiqlakaigieQPSlVRtldqleekglitrhtsandrrakriklteqsspiieqvdgvisstrkeilggissdeiavlsglidklekniiqlqtk
interface signature	IEQPVR/QPSVR

Estimated binding specificities ?

readout + contact

# IC=9.337 IC/col=0.718 n_of_columns=13

specificity:

A |   9   0   0  67  67  24  24  24  24   0  96   0  96
C |   9   0  96  11   9  24  24  24  24   0   0   0   0
G |   9   0   0   9  11  24  24  24  24   0   0   0   0
T |  69  96   0   9   9  24  24  24  24  96   0  96   0

scan!

home
updated Mon Sep 9 21:30:32 2024