4aij_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ROVA FROM YERSINIA IN COMPLEX WITH A ROVA PROMOTER FRAGMENT
reference	Heroven et al. J.Biol.Chem. 287 35796 2012
source	YERSINIA PSEUDOTUBERCULOSIS
experiment	X-ray (resolution=2.05, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4aik_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4aij_A interface=48,57,58,59,62,84, stlgsdlarlvrvwralidhrlkpleltqthwvtlyninrlppeqsqIqlakaigiEQPslVrtldqleekglitrhtsandrRakriklteqsspiieqvdgvisstrkeilggissdeiavlsglidklekniiqlq > 4aij_B interface=59,60,61,63,64, estlgsdlarlvrvwralidhrlkpleltqthwvtlyninrlppeqsqiqlakaigieQPSlVRtldqleekglitrhtsandrrakriklteqsspiieqvdgvisstrkeilggissdeiavlsglidklekniiqlqtk
interface signature	IEQPVR/QPSVR

Estimated binding specificities ?

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# IC=9.298 IC/col=0.715 n_of_columns=13

specificity:

A |   0  96   0  96  24  24  24  24   9   9   0  96  67
C |   0   0   0   0  24  24  24  24  11   9   0   0   9
G |   0   0   0   0  24  24  24  24   9  11  96   0  11
T |  96   0  96   0  24  24  24  24  67  67   0   0   9

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updated Wed Jul 30 00:36:50 2025