4aik_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ROVA FROM YERSINIA IN COMPLEX WITH AN INVASIN PROMOTER FRAGMENT (TRANSCRIPTIONAL REGULATOR SLYA)
reference	Heroven et al. J.Biol.Chem. 287 35796 2012
source	YERSINIA PSEUDOTUBERCULOSIS
experiment	X-ray (resolution=1.85, R-factor=0.200)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	MarR family;
multimeric complexes	4aij_AB
redundant complexes	4aij_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4aik_A interface=58,59,60,62,84, stlgsdlarlvrvwralidhrlkpleltqthwvtlyninrlppeqsqiqlakaigieQPSlVrtldqleekglitrhtsandrRakriklteqsspiieqvdgvisstrkeilggissdeiavlsglidklekniiqlq
interface signature	QPSVR

Estimated binding specificities ?

contact

# IC=5.339 IC/col=0.763 n_of_columns=7

specificity:

A |  11  69   0  96  24  67  96
C |  67   9   0   0  24   9   0
G |   9   9   0   0  24   9   0
T |   9   9  96   0  24  11   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ----RGSTRTSTHG--------RA--   L                                     +3zpl_B    
                                       +-----------------------------1 
  --DCLT--AGTTRG----RG--RA--   L     +-2                             +5h3r_A    
                                     ! ! 
  TT----KATTQTTG--LTRTKAFTYT   L   +-3 +-----------------------------2p7c_B    
                                   ! ! 
  ----------------YG--------     --4 +-----------------------------3eyi_B    
                                   ! 
  ----------NCTTNAVTNT------   L   +-----------------------------1pp7_U

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updated Fri Sep 13 18:02:28 2024