4atk_AB : 3D-footprint complex

structure name	MITF:E-BOX COMPLEX
reference	Pogenberg et al. 'Genes 26 2647 2012
source	MUS MUSCULUS
experiment	X-ray (resolution=2.95, R-factor=?)
structural superfamily	HLH, helix-loop-helix DNA-binding domain;
reference complex	6g1l_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4atk_A interface=3,4,7,10,11, dnHNliErrRRfnindrikelgtlipkdpdmrwnkgtilkasvdyirklqreqqrakdle > 4atk_B interface=5,6,9,12,13, kkdnHNliErrRRfnindrikelgtlipksndpdmrwnkgtilkasvdyirklqreqqra
interface signature	HNERR/HNERR

Estimated binding specificities ?

readout + contact

# IC=9.337 IC/col=1.037 n_of_columns=9

specificity:

A |  11   0  96   0   0   9   0   0   9
C |   9  96   0  96   0   9   0  96   9
G |  67   0   0   0  96  11  96   0   9
T |   9   0   0   0   0  67   0   0  69

scan!

home
updated Mon Sep 9 21:32:46 2024