4av1_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HUMAN PARP-1 DNA BINDING DOMAIN IN COMPLEX WITH DNA
reference	Arribas-Bosacoma et al. Nat.Struct.Mol.Biol. 19 685 2012
source	HOMO SAPIENS
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	2n8a_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4av1_A interface=11,13, dklyrveyakSgRasckkcsesipkdslrmaimvqspmfdgkvphwyhfscfwkvghsirhpdvevdgfselrwddqqkvkktaea > 4av1_B interface=16,42,45,48, ektlgdfaaeyaksnRstckgcmekiekgqvrlskkmvdpeKpqLgmIdrwyhpgcfvknreelgfrpeysasqlkgfsllatedkealkkqlpgv > 4av1_C interface=11,13, dklyrveyakSgRasckkcsesipkdslrmaimvqspmfdgkvphwyhfscfwkvghsirhpdvevdgfselrwddqqkvkktae > 4av1_D interface=15,41,44,47, ktlgdfaaeyaksnRstckgcmekiekgqvrlskkmvdpeKpqLgmIdrwyhpgcfvknreelgfrpeysasqlkgfsllatedkealkkqlpgv
interface signature	SR/RKLI/SR/RKLI

Estimated binding specificities ?

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# IC=8.472 IC/col=0.770 n_of_columns=11

specificity:

A |  96   0   0  13  24  24  24  13  96   0   0
C |   0   0   0  13  24  24  24  54   0   0   0
G |   0  96   0  57  24  24  24  16   0   0   0
T |   0   0  96  13  24  24  24  13   0  96  96

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updated Mon Sep 9 21:33:19 2024