interface graph thumbnail
legend  pdf

structure namePROTOTYPE FOAMY VIRUS STRAND TRANSFER COMPLEXES ON PRODUCT DNA
(INTEGRASE)
referenceLapkouski et al. 'Protein 21 1849 2012
sourceHUMAN SPUMARETROVIRUS
experimentX-ray (resolution=3.26, R-factor=0.187)
structural superfamilyRibonuclease H-like;
sequence familyIntegrase core domain;
reference complex3oym_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureIRQSRP

Estimated binding specificities ?

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# IC=3.276 IC/col=0.819 n_of_columns=4 specificity:   
A |  15   9  96   0
C |  15  11   0  96
G |  15  67   0   0
T |  51   9   0   0
scan!

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updated Thu Jan 8 23:53:19 2026