interface graph thumbnail
legend  pdf

structure namePROTOTYPE FOAMY VIRUS STRAND TRANSFER COMPLEXES ON PRODUCT DNA
(INTEGRASE)
referenceLapkouski et al. 'Protein 21 1849 2012
sourceHUMAN SPUMARETROVIRUS
experimentX-ray (resolution=3.26, R-factor=0.187)
structural superfamilyRibonuclease H-like;
sequence familyIntegrase core domain;
reference complex3oym_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureIRQSRP

Estimated binding specificities ?

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# IC=4.475 IC/col=0.895 n_of_columns=5 specificity:   
A |   0   0  13  54   0
C |   0   0  57  13   0
G |  96   0  13  16   0
T |   0  96  13  13  96
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updated Sat Aug 2 05:48:47 2025