4chu_AB : 3D-footprint complex

structure name	E. COLI ISCR-DNA COMPLEX
reference	Macedo-Ribeiro et al. Proc.Natl.Acad.Sci.USA 111 E2251 2014
source	ESCHERICHIA COLI K-12
experiment	X-ray (resolution=2.49, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4chu_A interface=39,41,42,44,45,60,62, mgrltskgryavtamldvalnseagpvpladiserqgiSlSYlEQlfsrlrknglvssvRgPgggyllgkdassiavgevisavdesvdkslthalwrdlsdrltgflnnitlgelvnnqevldvs > 4chu_B interface=38,40,41,43,44,59,61, grltskgryavtamldvalnseagpvpladiserqgiSlSYlEQlfsrlrknglvssvRgPgggyllgkdassiavgevisavdqgkggsqggdkslthalwrdlsdrltgflnnitlgelvnnqev
interface signature	SSYEQRP/SSYEQRP

Estimated binding specificities ?

readout + contact

# IC=13.451 IC/col=0.673 n_of_columns=20

specificity:

A |  69   0   0   0  24   0  96   8  24  24  24  24  24   8   0  87  24   0   0   8
C |  10   0  96  96  24  96   0  54  24  24  24  24  24   4   0   0  24   0   0   8
G |  13   0   0   0  24   0   0  17  24  24  24  24  24  71   0   9  24   0  96  11
T |   4  96   0   0  24   0   0  17  24  24  24  24  24  13  96   0  24  96   0  69

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updated Fri Dec 13 19:22:52 2024