4cn2_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA-BINDING DOMAIN BOUND TO THE HUMAN RAMP2 RESPONSE ELEMENT
reference	Poussin-Courmontagne et al. Sci.Rep. 5 8216 2015
source	HOMO SAPIENS
experiment	X-ray (resolution=2.07, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	6fbq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4cn2_C interface=25,28,32,33,81, mftkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeeRq > 4cn2_D interface=22,25,29,30,78, khicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeeRqrg
interface signature	EKKRR/EKKRR

Estimated binding specificities ?

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# IC=10.946 IC/col=0.912 n_of_columns=12

specificity:

A |   0   0  12   0  74  24  10   0   0   0   0  74
C |   0   0  10  96   7  24  12   0   0   0  96  10
G |  96  80   5   0   5  24  64  96  96   0   0   7
T |   0  16  69   0  10  24  10   0   0  96   0   5

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updated Mon Sep 9 21:46:28 2024