4cn2_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA-BINDING DOMAIN BOUND TO THE HUMAN RAMP2 RESPONSE ELEMENT
reference	Poussin-Courmontagne et al. Sci.Rep. 5 8216 2015
source	HOMO SAPIENS
experiment	X-ray (resolution=2.07, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4cn2_C interface=25,28,32,33,81, mftkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeeRq > 4cn2_D interface=22,25,29,30,78, khicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeeRqrg
interface signature	EKKRR/EKKRR

Estimated binding specificities ?

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# IC=11.119 IC/col=0.927 n_of_columns=12

specificity:

A |  10   0  96   0   0  10  24   1   0  58  21   0
C |  10   0   0  96  96  69  24   0   0  10  74  96
G |   7  96   0   0   0  12  24   5  96  18   0   0
T |  69   0   0   0   0   5  24  90   0  10   1   0

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updated Fri Dec 13 19:23:15 2024